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Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) Study. Sarcoidosis Protocol
Document Type
article
Source
Annals of the American Thoracic Society. 12(10)
Subject
Biomedical and Clinical Sciences
Cardiovascular Medicine and Haematology
Clinical Sciences
Human Genome
Genetics
Clinical Research
Lung
Autoimmune Disease
Emphysema
Detection
screening and diagnosis
4.1 Discovery and preclinical testing of markers and technologies
Aetiology
2.1 Biological and endogenous factors
Adolescent
Adult
Aged
Aged
80 and over
Biomarkers
Bronchoalveolar Lavage
Bronchoscopy
Cohort Studies
Female
Genomics
Humans
Male
Microbiota
Middle Aged
Research Design
Respiratory Function Tests
Sarcoidosis
Self Report
Tomography
X-Ray Computed
Young Adult
alpha 1-Antitrypsin Deficiency
bronchoalveolar lavage
lung
microbiome
phenotype
transcriptome
GRADS Sarcoidosis Study Group
Cardiovascular medicine and haematology
Clinical sciences
Language
Abstract
Sarcoidosis is a systemic disease characterized by noncaseating granulomatous inflammation with tremendous clinical heterogeneity and uncertain pathobiology and lacking in clinically useful biomarkers. The Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) study is an observational cohort study designed to explore the role of the lung microbiome and genome in these two diseases. This article describes the design and rationale for the GRADS study sarcoidosis protocol. The study addresses the hypothesis that distinct patterns in the lung microbiome are characteristic of sarcoidosis phenotypes and are reflected in changes in systemic inflammatory responses as measured by peripheral blood changes in gene transcription. The goal is to enroll 400 participants, with a minimum of 35 in each of 9 clinical phenotype subgroups prioritized by their clinical relevance to understanding of the pathobiology and clinical heterogeneity of sarcoidosis. Participants with a confirmed diagnosis of sarcoidosis undergo a baseline visit with self-administered questionnaires, chest computed tomography, pulmonary function tests, and blood and urine testing. A research or clinical bronchoscopy with a research bronchoalveolar lavage will be performed to obtain samples for genomic and microbiome analyses. Comparisons will be made by blood genomic analysis and with clinical phenotypic variables. A 6-month follow-up visit is planned to assess each participant's clinical course. By the use of an integrative approach to the analysis of the microbiome and genome in selected clinical phenotypes, the GRADS study is powerfully positioned to inform and direct studies on the pathobiology of sarcoidosis, identify diagnostic or prognostic biomarkers, and provide novel molecular phenotypes that could lead to improved personalized approaches to therapy for sarcoidosis.