부산대학교 도서관

Yee, Sook Wah; Ferrández-Peral, Luis; Alentorn-Moron, Pol; Fontsere, Claudia; Ceylan, Merve; Koleske, Megan L.; Handin, Niklas; Artegoitia, Virginia M.; Lara, Giovanni; Chien, Huan-Chieh; Zhou, Xujia; Dainat, Jacques; Zalevsky, Arthur; Sali, Andrej; Brand, Colin M.; Wolfreys, Finn D.; Yang, Jia; Gestwicki, Jason E.; Capra, John A.; Artursson, Per; Newman, John W.; Marquès-Bonet, Tomàs; Giacomini, Kathleen M.

Nature Communications. 15(1)

Ricardo Fong-Zazueta; Johanna Krueger; David M Alba; Xènia Aymerich; Robin M D Beck; Enrico Cappellini; Guillermo Carrillo-Martin; Omar Cirilli; Nathan Clark; Omar E Cornejo; Kyle Kai-How Farh; Luis Ferrández-Peral; David Juan; Joanna L Kelley; Lukas F K Kuderna; Jordan Little; Joseph D Orkin; Ryan S Paterson; Harvinder Pawar; Tomas Marques-Bonet; Esther Lizano

Genome Biol Evol
Digital.CSIC. Repositorio Institucional del CSIC
Consejo Superior de Investigaciones Científicas (CSIC)
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Fong-Zazueta, R, Krueger, J, Alba, D M, Aymerich, X, Beck, R M D, Cappellini, E, Carrillo-Martin, G, Cirilli, O, Clark, N, Cornejo, O E, Farh, K K-H, Ferrández-Peral, L, Juan, D, Kelley, J L, Kuderna, L F K, Little, J, Orkin, J D, Paterson, R S, Pawar, H, Marques-Bonet, T & Lizano, E 2025, ' Phylogenetic Signal in Primate Tooth Enamel Proteins and its Relevance for Paleoproteomics ', Genome Biology and Evolution, vol. 17, no. 2, evaf007 . https://doi.org/10.1093/gbe/evaf007
Genome Biology and Evolution, vol 17, iss 2
BioRxiv

Watson A; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.; Newcells Biotech Ltd., Newcastle upon Tyne, UK.; Queen R; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.; Ferrández-Peral L; Institute for Integrative Systems Biology, University of Valencia, Valencia, Spain.; Dorgau B; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.; Collin J; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.; Nelson A; NU-OMICs, Northumbria University, Newcastle Upon Tyne, UK.; Hussain R; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.; Coxhead J; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.; McCorkindale M; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.; Atkinson R; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.; Zerti D; Department of Biotechnological and Applied Clinical Sciences, Università degli Studi dell'Aquila, L'Aquila, Italy.; Chichagova V; Newcells Biotech Ltd., Newcastle upon Tyne, UK.; Conesa A; Institute for Integrative Systems Biology, University of Valencia, Valencia, Spain.; Armstrong L; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.; Newcells Biotech Ltd., Newcastle upon Tyne, UK.; Cremers FPM; Department of Human Genetics, Radboud University Medical Center, Nijmegen, the Netherlands.; Lako M; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK. majlinda.lako@ncl.ac.uk.

Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101524092 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-4889 (Electronic) NLM ISO Abbreviation: Cell Death Dis Subsets: MEDLINE

Sook Wah Yee; Luis Ferrández-Peral; Pol Alentorn; Claudia Fontsere; Merve Ceylan; Megan L. Koleske; Niklas Handin; Virginia M. Artegoitia; Giovanni Lara; Huan-Chieh Chien; Xujia Zhou; Jacques Dainat; Arthur Zalevsky; Andrej Sali; Colin M. Brand; John A. Capra; Per Artursson; John W. Newman; Tomas Marques-Bonet; Kathleen M. Giacomini

Res Sq
bioRxiv

Sook Wah Yee; Luis Ferrández-Peral; Pol Alentorn-Moron; Claudia Fontsere; Merve Ceylan; Megan L. Koleske; Niklas Handin; Virginia M. Artegoitia; Giovanni Lara; Huan-Chieh Chien; Xujia Zhou

Nature, Nature Communications. 15(1):1-17

Pardo-Palacios FJ; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Wang D; Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.; Reese F; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, USA.; Diekhans M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.; Carbonell-Sala S; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.; Williams B; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.; Loveland JE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK.; De María M; Department of Physiological Sciences, College of Veterinary Medicine, Gainesville, FL, USA.; Cherokee Nation System Solutions, contractor to the US Geological Survey-Wetland and Aquatic Research Center, Gainesville, FL, USA.; Adams MS; Department of Molecular Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, CA, USA.; Balderrama-Gutierrez G; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, USA.; Behera AK; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA.; Gonzalez Martinez JM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK.; Hunt T; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK.; Lagarde J; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.; Flomics Biotech, SL, Barcelona, Spain.; Liang CE; Department of Molecular Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, CA, USA.; Li H; Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.; Meade MJ; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA.; Moraga Amador DA; Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, USA.; Prjibelski AD; Department of Computer Science, University of Helsinki, Helsinki, Finland.; Center for Bioinformatics and Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia.; Birol I; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.; Bostan H; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, NC, USA.; Brooks AM; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, NC, USA.; Çelik MH; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, USA.; Chen Y; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.; Du MRM; Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.; Felton C; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA.; Göke J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.; Department of Statistics and Data Science, National University of Singapore, Singapore, Singapore.; Hafezqorani S; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.; Herwig R; Department Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany.; Kawaji H; Research Center for Genome & Medical Sciences, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan.; Lee J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.; Li JL; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, NC, USA.; Lienhard M; Department Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany.; Mikheenko A; Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK.; Mulligan D; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA.; Nip KM; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.; Pertea M; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, MD, USA.; Ritchie ME; Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia.; Sim AD; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.; Tang AD; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA.; Wan YK; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.; Wang C; Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.; Wong BY; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, MD, USA.; Yang C; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.; Barnes I; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK.; Berry AE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK.; Capella-Gutierrez S; Barcelona Supercomputing Center, Barcelona, Spain.; Cousineau A; Program in Molecular Medicine, Diabetes Center of Excellence, University of Massachusetts Chan Medical School, Worcester, MA, USA.; Dhillon N; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA.; Fernandez-Gonzalez JM; Barcelona Supercomputing Center, Barcelona, Spain.; Ferrández-Peral L; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Garcia-Reyero N; Energy, Installations & Environment, Office of the Assistant Secretary of Defense, Washington, DC, USA.; Götz S; Biobam Bioinformatics, Valencia, Spain.; Hernández-Ferrer C; Barcelona Supercomputing Center, Barcelona, Spain.; Kondratova L; Genetics Institute, University of Florida, Gainesville, FL, USA.; Liu T; Cardiff University, Cardiff, UK.; Martinez-Martin A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Menor C; Biobam Bioinformatics, Valencia, Spain.; Mestre-Tomás J; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Mudge JM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK.; Panayotova NG; Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, USA.; Paniagua A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Repchevsky D; Barcelona Supercomputing Center, Barcelona, Spain.; Ren X; Institute for Human Genetics, University of California, San Francisco, San Francisco, CA, USA.; Rouchka E; Department of Biochemistry & Molecular Genetics, University of Louisville, Louisville, KY, USA.; Saint-John B; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA.; Sapena E; European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.; Sheynkman L; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA.; Smith ML; Department of Biochemistry & Molecular Genetics, University of Louisville, Louisville, KY, USA.; Suner MM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK.; Takahashi H; Center for Integrative Medical Sciences, Laboratory for Transcriptome Technology, RIKEN, Yokohama, Japan.; Youngworth IA; Department of Genetics, Stanford University, Palo Alto, CA, USA.; Carninci P; Center for Integrative Medical Sciences, Laboratory for Transcriptome Technology, RIKEN, Yokohama, Japan.; Human Technopole, Milano, Italy.; Denslow ND; Department of Physiological Sciences, College of Veterinary Medicine, Gainesville, FL, USA.; Center for Environmental and Human Toxicology, Department of Physiological Sciences, University of Florida, Gainesville, FL, USA.; Guigó R; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Spain.; Hunter ME; US Geological Survey, Wetland and Aquatic Research Center, Gainesville, FL, USA.; Maehr R; Program in Molecular Medicine, Diabetes Center of Excellence, University of Massachusetts Chan Medical School, Worcester, MA, USA.; Shen Y; Institute for Human Genetics, Department of Neurology, University of California, San Francisco, San Francisco, CA, USA.; Tilgner HU; Brain and Mind Research Institute and Center for Neurogenetics, Weill Cornell Medicine, New York City, NY, USA.; Wold BJ; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.; Vollmers C; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA. vollmers@ucsc.edu.; Frankish A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK. frankish@ebi.ac.uk.; Au KF; Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA. kinfai@med.umich.edu.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA. kinfai@med.umich.edu.; Sheynkman GM; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA. gs9yr@virginia.edu.; Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA. gs9yr@virginia.edu.; UVA Cancer Center, University of Virginia, Charlottesville, VA, USA. gs9yr@virginia.edu.; Mortazavi A; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA. ali.mortazavi@uci.edu.; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, USA. ali.mortazavi@uci.edu.; Conesa A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain. ana.conesa@csic.es.; Microbiology and Cell Science Department, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, FL, USA. ana.conesa@csic.es.; Brooks AN; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA. anbrooks@ucsc.edu.; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA. anbrooks@ucsc.edu.

Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

Pardo-Palacios FJ; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; These authors contributed equally to this work.; Wang D; Department of Biomedical Informatics, The Ohio State University, Columbus, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA.; These authors contributed equally to this work.; Reese F; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA.; These authors contributed equally to this work.; Diekhans M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work.; Carbonell-Sala S; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Catalonia, Spain.; These authors contributed equally to this work.; Williams B; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA.; These authors contributed equally to this work.; Loveland JE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; These authors contributed equally to this work.; De María M; Department of Physiological Sciences, College of Veterinary Medicine, University of Florida, Gainesville, USA.; Center for Environmental and Human Toxicology, University of Florida, Gainesville, USA.; These authors contributed equally to this work.; Adams MS; Molecular Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work.; Balderrama-Gutierrez G; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA.; These authors contributed equally to this work.; Behera AK; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work.; Gonzalez JM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; These authors contributed equally to this work.; Hunt T; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; These authors contributed equally to this work.; Lagarde J; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Catalonia, Spain.; Flomics Biotech, Dr Aiguader 88, Barcelona 08003, Spain.; These authors contributed equally to this work.; Liang CE; Molecular Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work.; Li H; Department of Biomedical Informatics, The Ohio State University, Columbus, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA.; These authors contributed equally to this work.; Jerryd Meade M; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, USA.; These authors contributed equally to this work.; Moraga Amador DA; Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, USA.; These authors contributed equally to this work.; Prjibelski AD; Department of Computer Science, University of Helsinki, Helsinki, Finland.; Center for Bioinformatics and Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia.; These authors contributed equally to this work.; Birol I; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada.; Bostan H; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, USA.; Brooks AM; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, USA.; Hasan Çelik M; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA.; Chen Y; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.; Du MRM; Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Felton C; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.; Göke J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.; Department of Statistics and Data Science, National University of Singapore, Singapore, Singapore.; Hafezqorani S; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada.; Herwig R; Department Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany.; Kawaji H; Research Center for Genome & Medical Sciences, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan.; Lee J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.; Liang Li J; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, USA.; Lienhard M; Department Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany.; Mikheenko A; Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK.; Mulligan D; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.; Ming Nip K; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada.; Pertea M; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, USA.; Ritchie ME; Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Australia.; Sim AD; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.; Tang AD; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.; Kei Wan Y; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.; Wang C; Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Wong BY; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, USA.; Yang C; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada.; Barnes I; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; Berry A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; Capella S; Barcelona Supercomputing Cente, Barcelona, Spain.; Dhillon N; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.; Fernandez-Gonzalez JM; Barcelona Supercomputing Cente, Barcelona, Spain.; Ferrández-Peral L; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Garcia-Reyero N; Environmental Laboratory, US Army Engineer Research & Development Center, Vicksburg, USA.; Goetz S; Biobam Bioinformatics SL, Valencia, Spain.; Hernández-Ferrer C; Barcelona Supercomputing Cente, Barcelona, Spain.; Kondratova L; Genetics Institute, University of Florida, Gainesville, USA.; Liu T; Cardiff University, Cardiff, UK.; Martinez-Martin A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Menor C; Biobam Bioinformatics SL, Valencia, Spain.; Mestre-Tomás J; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Mudge JM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; Panayotova NG; Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, USA.; Paniagua A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Repchevsky D; Barcelona Supercomputing Cente, Barcelona, Spain.; Rouchka E; Department of Biochemistry & Molecular Genetics, University of Louisville, Louisville, USA.; Saint-John B; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.; Sapena E; European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK, UK.; Sheynkman L; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, USA.; Laird Smith M; Department of Biochemistry & Molecular Genetics, University of Louisville, Louisville, USA.; Suner MM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; Takahashi H; Center for Integrative Medical Sciences, Laboratory for Transcriptome Technology, RIKEN, Yokohama, Japan.; Youngworth IA; Department of Genetics, Stanford University, Palo Alto, USA.; Carninci P; Center for Integrative Medical Sciences, Laboratory for Transcriptome Technology, RIKEN, Yokohama, Japan.; Human Technopole, Milano, Italy.; Denslow ND; Department of Physiological Sciences, College of Veterinary Medicine, University of Florida, Gainesville, USA.; Center for Environmental and Human Toxicology, Department of Physiological Sciences,, University of Florida, Gainesville, USA.; Guigó R; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Catalonia, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Catalonia, Spain.; Hunter ME; U.S. Geological Survey, Wetland and Aquatic Research Center, Gainesville, USA.; Tilgner HU; Brain and Mind Research Institute and Center for Neurogenetics, Weill Cornell Medicine, New York City, USA.; Wold BJ; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA.; Vollmers C; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.; Frankish A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; Fai Au K; Department of Biomedical Informatics, The Ohio State University, Columbus, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA.; Sheynkman GM; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, USA.; Center for Public Health Genomics.; UVA Cancer Center, University of Virginia, Charlottesville, USA.; Mortazavi A; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA.; Conesa A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Microbiology and Cell Science Department, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, USA.; Brooks AN; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, USA.; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.

Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Esteller-Cucala P; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Doctor Aiguader 88, Barcelona, Spain. paula.esteller@upf.edu.; Palmada-Flores M; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Doctor Aiguader 88, Barcelona, Spain.; Kuderna LFK; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Doctor Aiguader 88, Barcelona, Spain.; Fontsere C; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Doctor Aiguader 88, Barcelona, Spain.; Serres-Armero A; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Doctor Aiguader 88, Barcelona, Spain.; Dabad M; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, Barcelona, Spain.; Torralvo M; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Doctor Aiguader 88, Barcelona, Spain.; Faella A; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Doctor Aiguader 88, Barcelona, Spain.; Ferrández-Peral L; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Doctor Aiguader 88, Barcelona, Spain.; Llovera L; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Doctor Aiguader 88, Barcelona, Spain.; Fornas O; Centre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology (BIST), Doctor Aiguader 88, Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Doctor Aiguader 88, Barcelona, Spain.; Julià E; Centre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology (BIST), Doctor Aiguader 88, Barcelona, Spain.; Ramírez E; Centre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology (BIST), Doctor Aiguader 88, Barcelona, Spain.; González I; Centre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology (BIST), Doctor Aiguader 88, Barcelona, Spain.; Hecht J; Centre for Genomic Regulation (CRG), Barcelona Institute for Science and Technology (BIST), Doctor Aiguader 88, Barcelona, Spain.; Lizano E; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Doctor Aiguader 88, Barcelona, Spain.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, Cerdanyola del Vallès, Spain.; Juan D; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Doctor Aiguader 88, Barcelona, Spain.; Marquès-Bonet T; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Doctor Aiguader 88, Barcelona, Spain. tomas.marques@upf.edu.; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, Barcelona, Spain. tomas.marques@upf.edu.; Universitat Pompeu Fabra (UPF), Doctor Aiguader 88, Barcelona, Spain. tomas.marques@upf.edu.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, Cerdanyola del Vallès, Spain. tomas.marques@upf.edu.; Institució Catalana de Recerca i Estudis Avançats (ICREA), Passeig Lluís Companys 23, Barcelona, Spain. tomas.marques@upf.edu.

Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

Yee SW; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, USA.; Ferrández-Peral L; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain.; Alentorn P; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain.; Fontsere C; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain; Center for Evolutionary Hologenomics, The Globe Institute, University of Copenhagen, Øster Farimagsgade 5A, 1352 Copenhagen, Denmark.; Ceylan M; Department of Pharmacy and Science for Life Laboratory, Uppsala University, P.O. Box 580, 75123, Uppsala, Sweden.; Koleske ML; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, USA.; Handin N; Department of Pharmacy and Science for Life Laboratory, Uppsala University, P.O. Box 580, 75123, Uppsala, Sweden.; Artegoitia VM; United States Department of Agriculture, Agricultural Research Service, Western Human Nutrition Research Center, Davis, CA 95616, USA.; Lara G; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, USA.; Chien HC; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, USA.; Zhou X; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, USA.; Dainat J; Joint Research Unit for Infectious Diseases and Vectors Ecology Genetics Evolution and Control (MIVEGEC), University of Montpellier, French National Center for Scientific Research (CNRS 5290), French National Research Institute for Sustainable Development (IRD 224), 911 Avenue Agropolis, BP 64501, 34394 Montpellier Cedex 5, France.; Zalevsky A; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, USA.; Sali A; Department of Bioengineering and Therapeutic Sciences, UCSF Box 0775 1700 4th St, University of California, San Francisco, San Francisco, CA 94158, United States; Department of Pharmaceutical Chemistry, University of California, San Francisco, UCSF Box 2880 600 16th St, San Francisco, CA 94143, United States; Quantitative Biosciences Institute (QBI), University of California, San Francisco, 1700 4th St, San Francisco, CA, United States.; Brand CM; Bakar Computational Health Sciences Institute, University of California, San Francisco, CA, USA; Department of Epidemiology and Biostatistics, University of California, San Francisco, CA, USA.; Capra JA; Bakar Computational Health Sciences Institute, University of California, San Francisco, CA, USA; Department of Epidemiology and Biostatistics, University of California, San Francisco, CA, USA.; Artursson P; Department of Pharmacy and Science for Life Laboratory, Uppsala University, P.O. Box 580, 75123, Uppsala, Sweden.; Newman JW; United States Department of Agriculture, Agricultural Research Service, Western Human Nutrition Research Center, Davis, CA 95616, USA; Department of Nutrition, University of California, Davis, Davis, CA 95616, USA; UC Davis West Coast Metabolomics Center, Davis, CA 95616, USA.; Marques-Bonet T; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain; Institute of Evolutionary Biology (UPF-CSIC), PRBB, Dr. Aiguader 88, 08003 Barcelona, Spain; Catalan Institution of Research and Advanced Studies (ICREA), Passeig de Lluís Companys, 23, 08010, Barcelona, Spain; CNAG, Centro Nacional de Analisis Genomico, Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, 08028 Barcelona, Spain; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, 08193 Cerdanyola del Vallès, Barcelona, Spain.; Giacomini KM; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, California, USA; Institute for Human Genetics, University of California San Francisco, San Francisco, CA, USA.

Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Zhu Y; Department of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.; Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA.; Sousa AMM; Department of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.; Gao T; Department of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.; Skarica M; Department of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.; Li M; Department of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.; Santpere G; Department of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.; Esteller-Cucala P; Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.; Juan D; Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.; Ferrández-Peral L; Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.; Gulden FO; Department of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.; Yang M; Department of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.; Miller DJ; Department of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.; Marques-Bonet T; Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.; Catalan Institution of Research and Advanced Studies (ICREA), Barcelona, Spain.; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Barcelona, Spain.; Imamura Kawasawa Y; Departments of Pharmacology and Biochemistry and Molecular Biology, Institute for Personalized Medicine, Penn State University College of Medicine, Hershey, PA, USA.; Zhao H; Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA.; Sestan N; Department of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA. nenad.sestan@yale.edu.; Departments of Genetics, Psychiatry, and Comparative Medicine, Program in Cellular Neuroscience, Neurodegeneration and Repair, and Yale Child Study Center, Yale School of Medicine, New Haven, CT, USA.

Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

Ferrández-Peral L; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain.; Zhan X; BGI-Shenzhen, Shenzhen 518083, China.; Alvarez-Estape M; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain.; Chiva C; Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08003 Barcelona, Spain.; Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain.; Esteller-Cucala P; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain.; García-Pérez R; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain.; Julià E; Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08003 Barcelona, Spain.; Lizano E; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193 Barcelona, Spain.; Fornas Ò; Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08003 Barcelona, Spain.; Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain.; Sabidó E; Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08003 Barcelona, Spain.; Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain.; Li Q; BGI-Shenzhen, Shenzhen 518083, China.; College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.; Marquès-Bonet T; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain.; Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193 Barcelona, Spain.; Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Spain.; CNAG-CRG, Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08028 Barcelona, Spain.; Juan D; Institute of Evolutionary Biology (UPF-CSIC), PRBB, 08003 Barcelona, Spain.; Zhang G; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.; Section for Ecology and Evolution, Department of Biology, University of Copenhagen, DK-2100 Copenhagen 2200, Denmark.; Evolutionary and Organismal Biology Research Center, School of Medicine, Zhejiang University, Hangzhou 310058, China.

Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE