학술논문
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'학술논문'
에서 검색결과 160건 | 목록
1~20
Academic Journal
David Fernando Ortiz-Pérez; Juan Diego Emiliani-Cortes; Karen Andrea Sierra-Tapia; Gerwin Rafael Pérez-Palmett; Daniela Rojas-Villafañe; Felipe Alejandro Ilelaty-Urbano; Natalia Sofia Torres-Herrera; Alberto Manotas-Giraldo; Juliana Álvarez-Díaz; Lauris Del Carmen Campo-Camacho; Víctor Andres Arteta-Reyes; Víctor Andres Torrente-Ramírez; Robin Luis Petro-Noriega; Gustavo Alberto Gutiérrez Barros; María Victoria Morales-Morales
Journal of Biosciences and Medicines. 13:229-242
Academic Journal
De arco-Rodríguez, Beatriz Elena; Pérez-Lozada, Jhindy Tatiana; Laiton-Donato, Katherine; Peláez-Carvajal, Dioselina; Puerto-Castro, Gloria Mercedes; Álvarez-Díaz, Diego Alejandro
Viruses. October, 2025, Vol. 17 Issue 10
Academic Journal
Saraswati Sarita; Martínez Paula; Serrano Rosa; Mejías Diego; Graña-Castro Osvaldo; Álvarez Díaz Ruth; Blasco Maria A.
Experimental and Molecular Medicine, 56(0), pp.2216-2230 Oct, 2024
Academic Journal
Sarita Saraswati; Paula Martínez; Rosa Serrano; Diego Mejías; Osvaldo Graña-Castro; Ruth Álvarez Díaz; Maria A. Blasco
Exp Mol Med
Repisalud
Instituto de Salud Carlos III (ISCIII)
Experimental and Molecular Medicine, Vol 56, Iss 10, Pp 2216-2230 (2024)
Repisalud
Instituto de Salud Carlos III (ISCIII)
Experimental and Molecular Medicine, Vol 56, Iss 10, Pp 2216-2230 (2024)
Academic Journal
Sarita Saraswati; Paula Martínez; Rosa Serrano; Diego Mejías; Osvaldo Graña-Castro; Ruth Álvarez Díaz; Juana María Flores; Maria A. Blasco
Docta Complutense
instname
instname
Academic Journal
Alfredo Bruno; Doménica de Mora; Paola Rojas-Estevez; Héctor Alejandro Ruiz-Moreno; Jessica Guzman-Otazo; Omar Cáceres; Victor Alberto Jiménez Vásquez; Jimmy Garcés; Maritza Olmedo; Carlos Franco-Muñoz; Veronica Medrano Romero; Evelin Esther Fortun Fernandez; Maria Renee Castro Cusicanqui; Miguel Angel Garcia-Bereguiain; “Grupo Andino de Vigilancia Genómica de SARS-CoV-2”; María del Carmen Calle Dávila; Marisela Mallqui Osorio; Luis Beingolea More; Perú; Dioselina Peláez-Carvajal; Martínez Vargas Daniel; Alicia Rosales; Beatriz Elena De arco-Rodriguez; Jhindy Tatiana Perez-Lozada; Jaime Alexander Chivatá-Ávila; Natalya Barandica; Tatiana Cobos; Katherine Laiton-Donato; Diego A. Álvarez-Díaz
Frontiers in Public Health, Vol 13 (2025)
Academic Journal
Rivera, Jorge Alonso; Rengifo, Aura Caterine; Álvarez Díaz, Diego Alejandro; Parra, Edgar; Usme Ciro, José Aldemar; Castellanos, Jaime; Velandia, Myriam; Laiton Donato, Katherine; Rico, Angélica; Pardo, Lisseth; Caldas, Maria Leonor
Repositorio UCC
Universidad Cooperativa de Colombia
instacron:Universidad Cooperativa de Colombia
Universidad Cooperativa de Colombia
instacron:Universidad Cooperativa de Colombia
Academic Journal
Chivatá-Ávila, Jaime Alexander; Rojas-Estevez, Paola; Muñoz-Suarez, Alejandra M.; Caro-Morales, Esthefanny; Rengifo, Aura Caterine; Torres-Fernández, Orlando; Lozano, Jose Manuel; Álvarez-Díaz, Diego A.
Viruses. March 2025, Vol. 17 Issue 3
Academic Journal
Diego A. Álvarez-Díaz; Hector A. Ruiz-Moreno; Silvana Zapata-Bedoya; Carlos Franco-Muñoz; Katherine Laiton-Donato; Carolina Ferro; Maria T. Herrera Sepulveda; Mauricio Pacheco-Montealegre; Diana M. Walteros; Laura C. Carrero-Galindo; Marcela Mercado-Reyes
Int J Infect Dis
International Journal of Infectious Diseases, Vol 125, Iss, Pp 149-152 (2022)
International Journal of Infectious Diseases, Vol 125, Iss, Pp 149-152 (2022)
Academic Journal
Katherine Laiton-Donato; Diego A. Álvarez-Díaz; Carlos Franco-Muñoz; Héctor A. Ruiz-Moreno; Paola Rojas-Estévez; Andrés Prada; Alicia Rosales; Martha Lucía Ospina; Marcela Mercado-Reyes
Biomedica
Biomédica: revista del Instituto Nacional de Salud, Vol 42, Iss 3, Pp 541-545 (2022)
Biomédica: revista del Instituto Nacional de Salud, Vol 42, Iss 3, Pp 541-545 (2022)
Academic Journal
Saraswati, Sarita; Martínez, Paula; Serrano, Rosa; Mejías, Diego; Graña-Castro, Osvaldo; Álvarez Díaz, Ruth; Blasco, Maria A.
Experimental & Molecular Medicine. 56(12):2763-2763
Academic Journal
Jorge Rivera; Sheryll Corchuelo; Julián Naizaque; Édgar Parra; Eugenio Aladino Meek; Diego Álvarez-Díaz; María Mercado; Orlando Torres-Fernández
Biomédica: revista del Instituto Nacional de Salud, Vol 43, Iss 1, Pp 8-21 (2023)
Academic Journal
Álvarez-Díaz, Diego A. ; Laiton-Donato, Katherine ; Torres-García, Orlando Alfredo ; Ruiz-Moreno, Hector Alejandro ; Franco-Muñoz, Carlos ; Beltran, Maria Angie ; Mercado-Reyes, Marcela ; Rueda, Miguel Germán ; Muñoz, Ana Luisa
In Virus Research 15 January 2022 308
Academic Journal
Álvarez-Díaz, Diego Alejandro; Usme-Ciro, José Aldemar; Corchuelo, Sheryll; Naizaque, Julián Ricardo; Rivera, Jorge Alonso; Castiblanco-Martínez, Hernán Darío; Torres-Fernández, Orlando; Rengifo, Aura Caterine
Archives of Virology: Official Journal of the Virology Division of the International Union of Microbiological Societies. 168(8)
Academic Journal
Rodríguez-Baño, Jesús; Pachón, Jerónimo; Carratalà, Jordi; Ryan, Pablo; Jarrín, Inmaculada; Yllescas, María; Arribas, José Ramón; Berenguer, Juan; Aznar Muñoz, Esther; Gil Divasson, Pedro; González Muñiz, Patricia; Muñoz Aguirre, Clara; Díaz Menéndez, Marta; de la Calle Prieto, Fernando; Arsuaga Vicente, Marta; Trigo Esteban, Elena; Pérez Valero, Ignacio; de Miguel Buckley, Rosa; Cadiñaños Loidi, Julen; Diaz Pollan, Beatriz; Martín Carbonero, Luz; Ramos Ramos, Juan Carlos; Loeches Yagüe, Belén; Montejano Sánchez, Rocío; González García, Juan; García Rodríguez, Julio; Ramírez, Margarita; Gutiérrez, Isabel; Tejerina, Francisco; Aldámiz-Echevarría, Teresa; Díez, Cristina; Fanciulli, Chiara; Pérez-Latorre, Leire; Pinilla, Blanca; López, Juan Carlos; Such Diaz, Ana; Álvaro Alonso, Elena; Torres Macho, Juan; Cuevas Tascon, Guillermo; Jiménez González de Buitrago, Eva; Brañas Baztán, Fátima; Valencia de la Rosa, Jorge; Pérez Butragueño, Mario; Fernández Jiménez, Inés; Muñiz Nicolás, Gemma; Sepúlveda Berrocal, Antonia; Gato Díez, Alberto; Toledano Sierra, María Pilar; García Butenegro, María Paz; Peláez Ballesta, Ana Isabel; Morcillo Rodríguez, Elena; Fernández Romero, Isidoro; Peláez Ballesta, Cristina; Guirado Torrecillas, María Isabel; Goikoetxea Agirre, Josune; Bereciartua Bastarrica, Elena; Guio Carrión, Laura; Rodríguez Álvarez, Regino; Ibarrola Hierro, Marta; Pérez Hernández, Isabel A.; Pérez Zapata, Inés; Román Soto, Sergio; Kallouchi, Mohamed; Domínguez Vicent, Juan Ramón; Silvariño Fernández, Rafae; Ugalde Espiñeira, Jon; Sanjuan López, Ainhoa; García Martínez, Silvia; Temprano Gogenola, Mikel; Asensi, Víctor; Suárez, Silvia; Suárez, Lucia; Yllera, Carmen; Rivas-Carmenado, María; Romero-Palacios, Alberto; Ruiz Aragón, Jesús; Jiménez Aguilar, Patricia; Fernández Ávila, Ma Luisa; Castilla Ortiz, Rosario; Alende Castro, Vanesa; Pérez García, Cristina; Fernández Morales, Marta; Valle Feijoo Begoña Rodríguez Ferreira, María Lorena María; Gómez-Junyent, Joan; Villar-García, Judit; López-Montesinos, Inmaculada; Arrieta-Aldea, Itziar; Rial-Villavecchia, Abora; García Vázquez, Elisa; Roura Piloto, Aychel Elena; Moral Escudero, Encarnación; Hernández Torres, Alicia; Albendín Iglesias, Helena; Vinuesa García, David; Martínez Montes, Clara; De la Hera Fernández, Francisco Javier; Anguita Santos, Francisco; Ruiz Sancho, Andrés; Díaz de Brito Fernández, Vicens; Sanmarti Vilamala, Montserrat; España Cueto, Sergio; Molina Morant, Daniel; González-Cuevas, Araceli; Chara Cervantes, Joel Elías; Policarpo Torres, Guillem; Ortega Montoliu, Meritxell; Angerri Nadal, Mònica; De Genover Gil, Ariadna; Patera, Eleni; Godoy Lorenzo, Rita; Zioga, Evangelia Anna María; Isern Fernández, Virginia; Sabbagh Fajardo, Carlos Enrique; Ferrer Ribera, Ana; Bea Serrano, Carlos; Oltra Sempere, Rosa; Vela Bernal, Sara; Albiol Viñals, Paloma; Pedromingo Kus, Miguel; Garcinuño, María Ángeles; Fiorante, Silvana; Pérez Pinto, Sergio; de la Vega, Alexandra; Fariñas Álvarez, María Carmen; González Rico, Claudia; Arnaiz de las Revillas, Francisco; Giménez, Teresa; Calvo, Jorge; Meije Castillo, Yolanda; Duarte Borges, Alejandra; Pareja Coca, Júlia; Clemente Presas, Mercedes; Sanz Salvador, Xavier; Pérez Rodríguez, Ma Teresa; Sousa, Adrián; Pérez González, Alexandre; Longueira, Rebeca; Araujo, Alejandro; Alonso Martínez, Blanca; García Escudero, Laura; Lidia Kamel Rey, Sara; Roa Alonso, David; Avilés Parra, Juan Pablo; Pelegrín Senent, Iván; Rouco Esteves Marques, Rosana; Raich Montiu, Laia; Souto Higueras, Jessica; Gálvez Bobadilla, Manuel Alejandro; Parra Ruiz, Jorge; Ramos Sesma, Violeta; Velasco Fuentes, Sara; García Pereña, Laura; Lluna Carrascosa, Alfonso; Gilaberte Reyzábal, Sergio; Liébana Gómez, Mónica; Salillas Hernando, Juan; Serrano Martínez, Alberto; Torralba González de Suso, Miguel; Martínez Martín, Patricia; Rábago Lorite, Isabel; González-Ruano Pérez, Patricia; Pérez-Monte Mínguez, Beatriz; García Flores, Ángeles; Comas Casanova, Pere; Martín Plata, Andrea; Santana Báez, Sergio Manuel; Sanz Peláez, Oscar; Mohamed Ramírez, Karim; Robaina Bordón, José María; Vílchez Rueda, Helem Haydeé; Riera Jaume, Melchor; Mut Ramon, Gemma; Gavalda Manso, Meritxell; Planas Bibiloni, Lluis; Castelo Corral, Laura; Ramos Merino, Lucía; Sánchez Vidal, Efrén; Rodríguez Mayo, María; Míguez Rey, Enrique; García de Lomas Guerrero, José M.; De la Torre Lima, Javier; Correa Ruiz, Ana; Fernández Sánchez, Fernando; Jiménez-García, Nicolás; Sierra-Monzón, José Luis; Gracia-Tello, Borja; Hernández-Bonaga, María; Pellejero, Galadriel; Asín-Corrochano, Marta; Boix Palop, Lucia; Calbo, Esther; Badía, Cristina; Dietl, Beatriz; Lucía, Gómez; Domínguez-Castellano, Ángel; Ríos-Villegas, María José; del Toro, María D.; Palacios Baena, Zaira R.; Salamanca-Rivera, Elena; Marín, Elena; Almadana, Virginia; Pérez-Galera, Salvador; González-Iglesias, Luisa; Abelenda-Alonso, Gabriela; Álvarez-Pouso, Claudia; Escrihuela, Francesc; Gudiol, Carlota; Lorenzo-Esteller, Laia; Niubó, Jordi; Podzamczer, Daniel; Pujol, Miquel; Rombauts, Alexander; Salvert Lletí, Miguel; Gil Sánchez, Ricardo; Jiménez Escrig, Marta; Parra Gómez, Laura; Tasias Pitarch, Mariona; Navarro Vilasaró, Marta; Machado Sicilia, María Luisa; Gomila Grange, Aina; Calzado Isbert, Sonia; Carrasco Antón, Nerea; Petkova-Saiz, Elizabet; Cabello Úbeda, Alfonso; Górgolas Hernández-Mora, Miguel; Sánchez-Pernaute, Olga; Dueñas Gutiérrez, Carlos; Martin Guerra, Javier; Castrodeza Sanz, José Javier; Fernández Espinilla, Virginia; Rodríguez Fernández, Laura; González-Moreno, Juan; Villoslada Gelabert, Aroa; Ribot Sanso, María Antonia; Fernández-Baca, María Victoria; Hernández Milian, Almudena; Morán Rodríguez, Miguel Ángel; Ortiz de Zárate Ibarra, Zuriñe; Portu Zapirain, José Joaquin; Saez de Adana Arroniz, Ester; Gainzarain Arana, Juan Carlos; Meca Birlanga, Olga; del Amor Espín, Ma Jesús; Viqueira González, Montserrat; García García, Josefina; Martínez Madrid, Onofre; Bernal Morell, Enrique; Alcaraz, Antonia; Muñoz, Ángeles; Pina, Ignacio; de la Rosa, Vicente; Caínzos Romero, Tamara; Sánchez Trigo, Sabela; Mariño Callejo, Ana Isabel; Álvarez Díaz, Hortensia; Valcarce Pardeiro, Nieves; Sánchez Serrano, Adriana; Piñar Cabezos, Diana; García Villalba, Eva Pilar; Aguayo Jiménez, Carmen; Ruíz Campuzano, María; Naranjo Velasco, Virginia; Santos Peña, Marta; Mora Delgado, Juan; Sevilla Moreno, Israel; Lojo Cruz, Cristina; Kortajarena Urkola, Xabier; Iribarren Loyarte, José Antonio; Bustinduy Odriozola, María Jesús; Ibarguren Pinilla, Maialen; Álvarez Rodríguez, Ignacio; Martínez Marcos, Francisco Javier; Rodríguez Gómez, Francisco Javier; Asschert Agüero, Isabel; Muñoz Beamud, Francisco; Ruiz Reina, Antonio José; Llenas-García, Jara; González-Cuello, Inmaculada; Hellín-Valiente, Elena; Martínez Birlanga, Esther; Tafalla Torres, José Manuel; Calderón Parra, Jorge; Escudero López, Gabriela; Gutiérrez Martín, Isabel; Andrés Eisenhofer, Ane; García Prieto, Sonia; Álvarez Franco, Raquel; Roger Zapata, Daniel; Martínez Cifre, Blanca; Aranda Rife, Elena; Martín Rubio, Irene; Barbosa Ventura, André; Garrido, Javier; Gonzalo, Concepción; Piñero, Iván; de la Cruz Felipe, Nieves; Talavera García, Eva; Lamata Subero, Marta; Mendoza Roy, Paula; García de Carlos, María Soledad; Lajusticia Aisa, Justo; Arteche Eguizabal, Lorea; Urrutia Losada, Ainhoa; Domingo Echaburu, Saioa; Cuadros Tito, Pedro Ángel; Orbe Narváez, Gurutz; Liébana Martos, Ma del Carmen; Roldán Fontana, Carolina; Herrero Rodríguez, Carmen; Duro Ruiz, Gaspar; Pérez Parra, Santiago; Mera Fidalgo, Arantzazu; Hortos Alsina, Miquel; Alberich Conesa, Ana; Bladé Vidal, Lourdes; Merchante Gutiérrez, Nicolás; León Jiménez, Eva; Espíndola Gómez, Reinaldo; Erostarbe Gallardo, María; Martínez Pérez-Crespo, Pedro; Cisneros, José Miguel; Aguilar-Guisado, Manuela; Aldabó, Teresa; Bueno, Claudio; Cordero-Matía, Elisa; Escoresca, Ana; Infante, Carmen; Guillermo, Martín; Salto, Sonsoles; Gioia, Francesca; Vizcarra, Pilar; Fortún Abete, Jesús; Martín Dávila, Pilar; Moreno Guillén, Santiago; Oteo Revuelta, José A.; García-García, Concepción; Santibañez Sáenz, Paula; Cervera Acedo, Cristina; Azcona Gutiérrez, José M.; Reguera Iglesias, José María; Plata Ciezar, Antonio; Valiente de Santis, Lucia; Sobrino Diaz, Beatriz; Ruiz Mesa, Juan Diego
Clin Microbiol Infect
Clin Microbiol Infect . 2021 Feb;27(2):244-252
UCrea Repositorio Abierto de la Universidad de Cantabria
Universidad de Cantabria (UC)
Dipòsit Digital de la UB
Universidad de Barcelona
Digital.CSIC. Repositorio Institucional del CSIC
Consejo Superior de Investigaciones Científicas (CSIC)
instname
RISalud-ANDALUCIA. Repositorio Institucional de Salud de Andalucía
Clinical Microbiology and Infection. Volume 27, Issue 2, February 2021, Pages 244-252
Repisalud
Instituto de Salud Carlos III (ISCIII)
Docusalut
Conselleria de Salut i Consum del Govern de les Illes Balears
idUS. Depósito de Investigación de la Universidad de Sevilla
Universidad de Sevilla (US)
Articles publicats en revistes (Institut d'lnvestigació Biomèdica de Bellvitge (IDIBELL))
Biblos-e Archivo. Repositorio Institucional de la UAM
Universidad Autónoma de Madrid
Clinical Microbiology and Infection
Clin Microbiol Infect . 2021 Feb;27(2):244-252
UCrea Repositorio Abierto de la Universidad de Cantabria
Universidad de Cantabria (UC)
Dipòsit Digital de la UB
Universidad de Barcelona
Digital.CSIC. Repositorio Institucional del CSIC
Consejo Superior de Investigaciones Científicas (CSIC)
instname
RISalud-ANDALUCIA. Repositorio Institucional de Salud de Andalucía
Clinical Microbiology and Infection. Volume 27, Issue 2, February 2021, Pages 244-252
Repisalud
Instituto de Salud Carlos III (ISCIII)
Docusalut
Conselleria de Salut i Consum del Govern de les Illes Balears
idUS. Depósito de Investigación de la Universidad de Sevilla
Universidad de Sevilla (US)
Articles publicats en revistes (Institut d'lnvestigació Biomèdica de Bellvitge (IDIBELL))
Biblos-e Archivo. Repositorio Institucional de la UAM
Universidad Autónoma de Madrid
Clinical Microbiology and Infection
Academic Journal
Katherine Laiton‐Donato; C. Julian Villabona-Arenas; José A. Usme-Ciro; Carlos Franco-Muñoz; Diego A. Álvarez-Díaz; Liz Stephany Villabona-Arenas; Susy Echeverría-Londoño; Zulma M. Cucunubá; Nicolás D. Franco‐Sierra; Astrid Carolina Flórez; Carolina Ferro; Nadim J. Ajami; Diana Marcela Walteros; Franklin Prieto; Carlos Andrés Durán; Martha L. Ospina-Martinez; Marcela Mercado
Emerg Infect Dis
Emerging Infectious Diseases, Vol 26, Iss 12, Pp 2854-2862 (2020)
Repositorio UCC
Universidad Cooperativa de Colombia
instacron:Universidad Cooperativa de Colombia
Wu F, Zhao S, Yu B, Chen Y-M, Wang W, Song Z-G, et al. A new coronavirus associated with human respiratory disease in China. Nature. 2020;579:265–9. https://doi.org/10.1038/ s41586-020-2008-3
World Health Organization. Novel coronavirus—China, 2020 Jan 12 [cited 2020 Jun 16]. https://www.who.int/csr/ don/12-january-2020-novel-coronavirus-china
Kraemer MUG, Yang C-H, Gutierrez B, Wu C-H, Klein B, Pigott DM, et al.; Open COVID-19 Data Working Group. The effect of human mobility and control measures on the COVID-19 epidemic in China. Science. 2020;368:493–7. https://doi.org/10.1126/science.abb4218
He X, Lau EHY, Wu P, Deng X, Wang J, Hao X, et al. Temporal dynamics in viral shedding and transmissibility of COVID-19. Nat Med. 2020;26:672–5. https://doi.org/ 10.1038/s41591-020-0869-5
Li J, Zhang L, Liu B, Song D. Case report: viral shedding for 60 days in a woman with COVID-19. Am J Trop Med Hyg. 2020;102:1210–3. https://doi.org/10.4269/ajtmh.20-0275
Jarvis CI, Van Zandvoort K, Gimma A, Prem K, Klepac P, Rubin GJ, et al. CMMID COVID-19 working group. Quantifying the impact of physical distance measures on the transmission of COVID-19 in the UK. BMC Med. 2020;18:124. https://doi.org/10.1186/s12916-020-01597-8
Prem K, Liu Y, Russell TW, Kucharski AJ, Eggo RM, Davies N, et al.; Centre for the Mathematical Modelling of Infectious Diseases COVID-19 Working Group. The effect of control strategies to reduce social mixing on outcomes of the COVID-19 epidemic in Wuhan, China: a modelling study. Lancet Public Health. 2020;5:e261–70. https://doi.org/ 10.1016/S2468-2667(20)30073-6
Hellewell J, Abbott S, Gimma A, Bosse NI, Jarvis CI, Russell TW, et al.; Centre for the Mathematical Modelling of Infectious Diseases COVID-19 Working Group. Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. Lancet Glob Health. 2020;8:e488–96. https://doi.org/ 10.1016/S2214-109X(20)30074-7
Chinazzi M, Davis JT, Ajelli M, Gioannini C, Litvinova M, Merler S, et al. The effect of travel restrictions on the spread of the 2019 novel coronavirus (COVID-19) outbreak. Science. 2020;368:395–400. https://doi.org/10.1126/ science.aba9757
Ribeiro F, Leist A. Who is going to pay the price of Covid-19? Reflections about an unequal Brazil. Int J Equity Health. 2020;19:91. https://doi.org/10.1186/s12939-020-01207-2
Ministry of Health and Social Protection. Colombia. Minsalud confirms six new cases of coronavirus (COVID-19) in Colombia [in Spanish]. Bogotá, Colombia; Boletín de Prensa no. 057 de 2020. 2020 [cited 2020 May 24]. https://www.minsalud.gov.co/Paginas/Minsaludconfirma-seis-nuevos-casos-de-coronavirus-(COVID-19)-en-Colombia.aspx
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Bushnell B. BBMap short read aligner, and other bioinformatic tools [cited 2020 May 10]. https://escholarship.org/uc/ item/1h3515gn
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Rambaut A, Holmes EC, Hill V, O’Toole Á, McCrone JT, Ruis C, et al. A dynamic nomenclature proposal for SARSCoV-2 to assist genomic epidemiology. Nat Microbiol. 2020 Jul 15 [Epub ahead of print]. https://doi.org/10.1038/ s41564-020-0770-5
O’Toole A, McCrone JT. Pangolin: Phylogenetic Assignment of Named Global Outbreak LINeages [cited 2020 Jun 18]. https://github.com/hCoV-2019/pangolin
Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002;30:3059–66. https://doi.org/10.1093/nar/gkf436
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Hasegawa M, Kishino H, Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 1985;22:160–74. https://doi.org/10.1007/BF02101694
Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, et al. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 2020;37:1530–4. https://doi.org/10.1093/ molbev/msaa015
Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 2010;59:307–21. https://doi.org/10.1093/sysbio/syq010
Sagulenko P, Puller V, Neher RA. TreeTime: maximumlikelihood phylodynamic analysis. Virus Evol. 2018;4:vex042. https://doi.org/10.1093/ve/vex042
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Candido DDS, Watts A, Abade L, Kraemer MUG, Pybus OG, Croda J, et al. Routes for COVID-19 importation in Brazil. J Travel Med. 2020;27:taaa042. https://doi.org/10.1093/jtm/ taaa042
Ministry of Health and Social Protection, Colombia. Resolution number 0000380 [in Spanish]. 2020 Mar 10 [cited 2020 June 2] https://www.minsalud.gov.co/ Normatividad_Nuevo/Resoluci%C3%B3n%20No.%20 380%20de%202020.pdf
Ministry of Health and Social Protection, Colombia. Resolution number 0000385 [in Spanish]. 2020 Mar 12 [cited 2020 June 2] https://www.minsalud.gov.co/sites/rid/Lists/Biblioteca Digital/RIDE/DE/DIJ/resolucion-385-de-2020.pdf
Ministry of the Interior, Colombia. Decree 412 [in Spanish]. 2020 Mar 16 [cited 2020 June 2]. https://dapre.presidencia. gov.co/normativa/normativa/DECRETO%20412%20 DEL%2016%20DE%20MARZO%20DE%202020.pdf
Ministry of the Interior, Colombia. Decree 457 [in Spanish]. 2020 Mar 22 [cited 2020 June 2] https://dapre.presidencia. gov.co/normativa/normativa/DECRETO%20457%20 DEL%2022%20DE%20MARZO%20DE%202020.pdf
Ministry of Transport, Colombia. Decree 439 [in Spanish]. 2020 Mar 20 [cited 2020 May 10] https://dapre.presidencia. gov.co/normativa/normativa/DECRETO%20439%20 DEL%2020%20DE%20MARZO%20DE%202020.pdf
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Sun K, Chen J, Viboud C. Early epidemiological analysis of the coronavirus disease 2019 outbreak based on crowdsourced data: a population-level observational study. Lancet Digit Health. 2020;2:e201–8. https://doi.org/10.1016/ s2589-7500(20)30026-1
Castillo AE, Parra B, Tapia P, Acevedo A, Lagos J, Andrade W, et al. Phylogenetic analysis of the first four SARS-CoV-2 cases in Chile. J Med Virol. 2020;92:1562–6. https://doi.org/10.1002/jmv.25797
Candido DS, Claro IM, de Jesus JG, Souza WM, Moreira FRR, Dellicour S, et al.; Brazil-UK Centre for Arbovirus Discovery, Diagnosis, Genomics and Epidemiology (CADDE) Genomic Network. Evolution and epidemic spread of SARS-CoV-2 in Brazil. Science. 2020;369:1255–60. https://doi.org/10.1126/ science.abd2161
Korber B, Fischer WM, Gnanakaran S, Yoon H, Theiler J, Abfalterer W, et al.; Sheffield COVID-19 Genomics Group. Tracking changes in SARS-CoV-2 spike: evidence that D614G increases infectivity of the COVID-19 virus. Cell. 2020;182:812–827.e19. https://doi.org/10.1016/ j.cell.2020.06.043
da Silva Candido D, Watts A, Abade L, Kraemer MUG, Pybus OG, Croda J, et al. Routes for COVID-19 importation in Brazil. J Travel Med. 2020;27:taaa042. https://doi.org/ 10.1093/jtm/taaa042
Emerging Infectious Diseases, Vol 26, Iss 12, Pp 2854-2862 (2020)
Repositorio UCC
Universidad Cooperativa de Colombia
instacron:Universidad Cooperativa de Colombia
Wu F, Zhao S, Yu B, Chen Y-M, Wang W, Song Z-G, et al. A new coronavirus associated with human respiratory disease in China. Nature. 2020;579:265–9. https://doi.org/10.1038/ s41586-020-2008-3
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Ministry of Health and Social Protection. Colombia. Minsalud confirms six new cases of coronavirus (COVID-19) in Colombia [in Spanish]. Bogotá, Colombia; Boletín de Prensa no. 057 de 2020. 2020 [cited 2020 May 24]. https://www.minsalud.gov.co/Paginas/Minsaludconfirma-seis-nuevos-casos-de-coronavirus-(COVID-19)-en-Colombia.aspx
National Institute of Health. Colombia. COVID-2019 in Colombia daily report 2020 March 31 [in Spanish] [cited 2020 Jun 2]. https://www.ins.gov.co/Noticias/Paginas/ Coronavirus.aspx
National Institute of Health. Colombia. COVID-2019 in Colombia daily report 2020 Jun 18 [in Spanish] [cited 2020 Jun 2]. https://www.ins.gov.co/Noticias/Paginas/ Coronavirus.aspx
Grubaugh ND, Ladner JT, Lemey P, Pybus OG, Rambaut A, Holmes EC, et al. Tracking virus outbreaks in the twentyfirst century. Nat Microbiol. 2019;4:10–9. https://doi.org/ 10.1038/s41564-018-0296-2
Lu J, du Plessis L, Liu Z, Hill V, Kang M, Lin H, et al. Genomic epidemiology of SARS-CoV-2 in Guangdong Province, China. Cell. 2020;181:997–1003.e9. https://doi.org/ 10.1016/j.cell.2020.04.023
Eden J-S, Rockett R, Carter I, Rahman H, de Ligt J, Hadfield J, et al. An emergent clade of SARS-CoV-2 linked to returned travellers from Iran. Virus Evol. 2020;6:veaa027. https://doi.org/10.1093/ve/veaa027
Gudbjartsson DF, Helgason A, Jonsson H, Magnusson OT, Melsted P, Norddahl GL, et al. Spread of SARS-CoV-2 in the Icelandic Population. N Engl J Med. 2020;382:2302–15. https://doi.org/10.1056/NEJMoa2006100
Corman VM, Landt O, Kaiser M, Molenkamp R, Meijer A, Chu DK, et al. Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR. Euro Surveill. 2020;25:2000045. https://doi.org/10.2807/1560-7917. ES.2020.25.3.2000045
Quick J. nCoV-2019 sequencing protocol version 1. protocols. io; 2020 Jan 22 [cited 2020 Mar 2]. https://www.protocols. io/view/ncov-2019-sequencing-protocol-bbmuik6w
Wick R. Porechop version 0.2.4. 2018 Oct 19 [cited 2020 Jun 18]. https://github.com/rrwick/Porechop
Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 2010;26:589–95. https://doi.org/10.1093/bioinformatics/btp698
Simpson J. Nanopolish: signal-level algorithms for MinION data [cited 2020 May 10]. https://github com/jts/nanopolish
Chen S, Zhou Y, Chen Y, Gu J. fastp: an ultra-fast all-inone FASTQ preprocessor. Bioinformatics. 2018;34:i884–90. https://doi.org/10.1093/bioinformatics/bty560
Bushnell B. BBMap short read aligner, and other bioinformatic tools [cited 2020 May 10]. https://escholarship.org/uc/ item/1h3515gn
Hadfield J, Megill C, Bell SM, Huddleston J, Potter B, Callender C, et al. Nextstrain: real-time tracking of pathogen evolution. Bioinformatics. 2018;34:4121–3. https://doi.org/10.1093/bioinformatics/bty407
Rambaut A, Holmes EC, Hill V, O’Toole Á, McCrone JT, Ruis C, et al. A dynamic nomenclature proposal for SARSCoV-2 to assist genomic epidemiology. Nat Microbiol. 2020 Jul 15 [Epub ahead of print]. https://doi.org/10.1038/ s41564-020-0770-5
O’Toole A, McCrone JT. Pangolin: Phylogenetic Assignment of Named Global Outbreak LINeages [cited 2020 Jun 18]. https://github.com/hCoV-2019/pangolin
Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002;30:3059–66. https://doi.org/10.1093/nar/gkf436
De Maio N, Walker C, Borges R, Weilguny L, Slodkowicz G, Goldman N. Issues with SARS-CoV-2 sequencing data. 2020 Jul 29 [cited 2020 Jun 16]. https://virological.org/t/issueswith-sars-cov-2-sequencing-data/473
Hasegawa M, Kishino H, Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 1985;22:160–74. https://doi.org/10.1007/BF02101694
Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, et al. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 2020;37:1530–4. https://doi.org/10.1093/ molbev/msaa015
Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 2010;59:307–21. https://doi.org/10.1093/sysbio/syq010
Sagulenko P, Puller V, Neher RA. TreeTime: maximumlikelihood phylodynamic analysis. Virus Evol. 2018;4:vex042. https://doi.org/10.1093/ve/vex042
To T-H, Jung M, Lycett S, Gascuel O. Fast dating using leastsquares criteria and algorithms. Syst Biol. 2016;65:82–97. https://doi.org/10.1093/sysbio/syv068
World Health Organization. Novel coronavirus (2019-nCoV) situation report—57. 2020 March 17 [cited 2020 May 10]. https://www.who.int/emergencies/diseases/novelcoronavirus-2019/situation-reports
United Nations Population Division. World population prospects 2019 [cited 2020 Jun 19]. https://population. un.org/wpp/Download/Metadata/Documentation
Candido DDS, Watts A, Abade L, Kraemer MUG, Pybus OG, Croda J, et al. Routes for COVID-19 importation in Brazil. J Travel Med. 2020;27:taaa042. https://doi.org/10.1093/jtm/ taaa042
Ministry of Health and Social Protection, Colombia. Resolution number 0000380 [in Spanish]. 2020 Mar 10 [cited 2020 June 2] https://www.minsalud.gov.co/ Normatividad_Nuevo/Resoluci%C3%B3n%20No.%20 380%20de%202020.pdf
Ministry of Health and Social Protection, Colombia. Resolution number 0000385 [in Spanish]. 2020 Mar 12 [cited 2020 June 2] https://www.minsalud.gov.co/sites/rid/Lists/Biblioteca Digital/RIDE/DE/DIJ/resolucion-385-de-2020.pdf
Ministry of the Interior, Colombia. Decree 412 [in Spanish]. 2020 Mar 16 [cited 2020 June 2]. https://dapre.presidencia. gov.co/normativa/normativa/DECRETO%20412%20 DEL%2016%20DE%20MARZO%20DE%202020.pdf
Ministry of the Interior, Colombia. Decree 457 [in Spanish]. 2020 Mar 22 [cited 2020 June 2] https://dapre.presidencia. gov.co/normativa/normativa/DECRETO%20457%20 DEL%2022%20DE%20MARZO%20DE%202020.pdf
Ministry of Transport, Colombia. Decree 439 [in Spanish]. 2020 Mar 20 [cited 2020 May 10] https://dapre.presidencia. gov.co/normativa/normativa/DECRETO%20439%20 DEL%2020%20DE%20MARZO%20DE%202020.pdf
Chancellery of Colombia. Communication on humanitarian flights from 2 to 12 July; 2020 June 17 [cited 2020 Jun 19]. https://www.cancilleria.gov.co/newsroom/publiques/ comunicado-vuelos-caracter-humanitario-2-12-julio
Sun K, Chen J, Viboud C. Early epidemiological analysis of the coronavirus disease 2019 outbreak based on crowdsourced data: a population-level observational study. Lancet Digit Health. 2020;2:e201–8. https://doi.org/10.1016/ s2589-7500(20)30026-1
Castillo AE, Parra B, Tapia P, Acevedo A, Lagos J, Andrade W, et al. Phylogenetic analysis of the first four SARS-CoV-2 cases in Chile. J Med Virol. 2020;92:1562–6. https://doi.org/10.1002/jmv.25797
Candido DS, Claro IM, de Jesus JG, Souza WM, Moreira FRR, Dellicour S, et al.; Brazil-UK Centre for Arbovirus Discovery, Diagnosis, Genomics and Epidemiology (CADDE) Genomic Network. Evolution and epidemic spread of SARS-CoV-2 in Brazil. Science. 2020;369:1255–60. https://doi.org/10.1126/ science.abd2161
Korber B, Fischer WM, Gnanakaran S, Yoon H, Theiler J, Abfalterer W, et al.; Sheffield COVID-19 Genomics Group. Tracking changes in SARS-CoV-2 spike: evidence that D614G increases infectivity of the COVID-19 virus. Cell. 2020;182:812–827.e19. https://doi.org/10.1016/ j.cell.2020.06.043
da Silva Candido D, Watts A, Abade L, Kraemer MUG, Pybus OG, Croda J, et al. Routes for COVID-19 importation in Brazil. J Travel Med. 2020;27:taaa042. https://doi.org/ 10.1093/jtm/taaa042
Academic Journal
Biomedica
Biomédica: revista del Instituto Nacional de Salud, Vol 40, Iss Supl. 2, Pp 188-197 (2020)
Biomédica: revista del Instituto Nacional de Salud, Vol 40, Iss Supl. 2, Pp 188-197 (2020)
Academic Journal
Francisco J. Díaz; Wbeimar Aguilar-Jiménez; Lizdany Flórez-Álvarez; Gladys Valencia; Katherine Laiton-Donato; Carlos Franco-Muñoz; Diego Álvarez-Díaz; Marcela Mercado-Reyes; María Teresa Rugeles
Biomedica
Biomédica: revista del Instituto Nacional de Salud, Vol 40, Iss Supl. 2, Pp 148-158 (2020)
Repositorio UdeA
Universidad de Antioquia
instacron:Universidad de Antioquia
Biomédica: revista del Instituto Nacional de Salud, Vol 40, Iss Supl. 2, Pp 148-158 (2020)
Repositorio UdeA
Universidad de Antioquia
instacron:Universidad de Antioquia
Academic Journal
Rivera, Jorge Alonso; Rengifo, Aura Caterine; Rosales Munar, Alicia; Díaz Herrera, Taylor H.; Usme Ciro, José Aldemar; Parra, Edgar; Álvarez Díaz, Diego Alejandro; Laiton Donato, Katherine; Caldas, Maria Leonor
Virol J
Virology Journal, Vol 20, Iss 1, Pp 1-10 (2023)
Repositorio UCC
Universidad Cooperativa de Colombia
instacron:Universidad Cooperativa de Colombia
Virology Journal, Vol 20, Iss 1, Pp 1-10 (2023)
Repositorio UCC
Universidad Cooperativa de Colombia
instacron:Universidad Cooperativa de Colombia
Academic Journal
Rengifo, Aura Caterine; Rivera, Jorge; Álvarez-Díaz, Diego Alejandro; Naizaque, Julián; Santamaria, Gerardo; Corchuelo, Sheryll; Gómez, Claudia Yadira; Torres-Fernández, Orlando
Viruses. July, 2023, Vol. 15 Issue 8
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