학술논문

Novel genes and sex differences in COVID-19 severity
Document Type
Author
Cruz, RaquelDiz-de Almeida, SilviaLópez de Heredia, MiguelQuintela, InésCeballos, Francisco CPita, GuillermoLorenzo-Salazar, José MGonzález-Montelongo, RafaelaGago-Domínguez, ManuelaSevilla Porras, MartaTenorio Castaño, Jair AntonioNevado, JulianAguado, Jose MaríaAguilar, CarlosAguilera-Albesa, SergioAlmadana, VirginiaAlmoguera, BertaAlvarez, NuriaAndreu-Bernabeu, ÁlvaroArana-Arri, EunateArango, CelsoArranz, María JArtiga, Maria-JesusBaptista-Rosas, Raúl CBarreda-Sánchez, MaríaBelhassen-Garcia, MoncefBezerra, Joao FBezerra, Marcos A CBoix-Palop, LucíaBrion, MaríaBrugada, RamónBustos, MatildeCalderón, Enrique JCarbonell, CristinaCastano, LuisCastelao, Jose EConde-Vicente, RosaCordero-Lorenzana, M LourdesCortes-Sanchez, Jose LCorton, MartaDarnaude, M TeresaDe Martino-Rodríguez, AlbaDel Campo-Pérez, VictorDiaz de Bustamante, AranzazuDomínguez-Garrido, ElenaLuchessi, Andre DEiros, RocíoEstigarribia Sanabria, Gladys MercedesCarmen Fariñas, MaríaFernández-Robelo, UxíaFernández-Rodríguez, AmandaFernández-Villa, TaniaGil-Fournier, BelénGómez-Arrue, JavierGonzález Álvarez, BeatrizGonzalez Bernaldo de Quirós, FernanGonzález-Peñas, JavierGutiérrez-Bautista, Juan FHerrero, María JoséHerrero-Gonzalez, AntonioJimenez-Sousa, María ALattig, María ClaudiaLiger Borja, AnabelLopez-Rodriguez, RosarioMancebo, EstherMartín-López, CaridadMartín, VicenteMartinez-Nieto, OscarMartinez-Lopez, IciarMartinez-Resendez, Michel FMartinez-Perez, AngelMazzeu, Juliana FMerayo Macías, EleuterioMinguez, PabloMoreno Cuerda, VictorSilbiger, Vivian NOliveira, Silviene FOrtega-Paino, EvaParellada, MaraPaz-Artal, EstelaSantos, Ney P CPérez-Matute, PatriciaPerez, PatriciaPérez-Tomás, M ElenaPerucho, TeresaPinsach-Abuin, Mel LinaPompa-Mera, Ericka NPorras-Hurtado, Gloria LPujol, AuroraRamiro León, SorayaResino, SalvadorFernandes, Marianne RRodríguez-Ruiz, EmilioRodriguez-Artalejo, FernandoRodriguez-Garcia, José ARuiz Cabello, FranciscoRuiz-Hornillos, JavierRyan, PabloSoria, José ManuelSouto, Juan CarlosTamayo, EduardoTamayo-Velasco, AlvaroTaracido-Fernandez, Juan CarlosTeper, AlejandroTorres-Tobar, LilianUrioste, MiguelValencia-Ramos, JuanYáñez, ZuleimaZarate, RuthNakanishi, TomokoPigazzini, SaraDegenhardt, FraukeButler-Laporte, GuillaumeMaya-Miles, DouglasBujanda, LuisBouysran, YoussefPalom, AdrianaEllinghaus, DavidMartínez-Bueno, ManuelRolker, SelinaAmitrano, SaraRoade, LuisaFava, FrancescaSpinner, Christoph DPrati, DanieleBernardo, DavidGarcia, FedericoDarcis, GillesFernández-Cadenas, IsraelHolter, Jan CatoBanales, Jesus MFrithiof, RobertDuga, StefanoAsselta, RosannaPereira, Alexandre CRomero-Gómez, ManuelNafría-Jiménez, BeatrizHov, Johannes RMigeotte, IsabelleRenieri, AlessandraPlanas, Anna MLudwig, Kerstin UButi, MariaRahmouni, SouadAlarcón-Riquelme, Marta ESchulte, Eva CFranke, AndreKarlsen, Tom HValenti, LucaZeberg, HugoRichards, BrentGanna, AndreaBoada, Mercède Rojas, ItziarRuiz, AgustínSánchez-Juan, PascualReal, Luis MiguelGuillen-Navarro, EncarnaAyuso, CarmenGonzález-Neira, AnnaRiancho, José ARojas-Martinez, AugustoFlores, CarlosLapunzina, PabloCarracedo, Angel
Source
Human Molecular Genetics. 31(22):3789-3806
Subject
Language
English
ISSN
0964-6906
1460-2083
Abstract
Here, we describe the results of a genome-wide study conducted in 11 939 coronavirus disease 2019 (COVID-19) positive cases with an extensive clinical information that were recruited from 34 hospitals across Spain (SCOURGE consortium). In sex-disaggregated genome-wide association studies for COVID-19 hospitalization, genome-wide significance (P < 5 × 10−8) was crossed for variants in 3p21.31 and 21q22.11 loci only among males (P = 1.3 × 10−22 and P = 8.1 × 10−12, respectively), and for variants in 9q21.32 near TLE1 only among females (P = 4.4 × 10−8). In a second phase, results were combined with an independent Spanish cohort (1598 COVID-19 cases and 1068 population controls), revealing in the overall analysis two novel risk loci in 9p13.3 and 19q13.12, with fine-mapping prioritized variants functionally associated with AQP3 (P = 2.7 × 10−8) and ARHGAP33 (P = 1.3 × 10−8), respectively. The meta-analysis of both phases with four European studies stratified by sex from the Host Genetics Initiative (HGI) confirmed the association of the 3p21.31 and 21q22.11 loci predominantly in males and replicated a recently reported variant in 11p13 (ELF5, P = 4.1 × 10−8). Six of the COVID-19 HGI discovered loci were replicated and an HGI-based genetic risk score predicted the severity strata in SCOURGE. We also found more SNP-heritability and larger heritability differences by age (<60 or ≥60 years) among males than among females. Parallel genome-wide screening of inbreeding depression in SCOURGE also showed an effect of homozygosity in COVID-19 hospitalization and severity and this effect was stronger among older males. In summary, new candidate genes for COVID-19 severity and evidence supporting genetic disparities among sexes are provided.