학술논문

Structure-based design of a chemical probe set for the 5-HT5A serotonin receptor
Document Type
article
Source
Subject
Theory Of Computation
Biomedical and Clinical Sciences
Medicinal and Biomolecular Chemistry
Chemical Sciences
Information and Computing Sciences
Pharmacology and Pharmaceutical Sciences
Chronic Pain
Pain Research
Neurosciences
Mental Health
Language
Abstract
ABSTRACT The 5-HT 5A receptor (5-HT 5A R), for which no selective agonists and only a few antagonists exist, remains the least understood serotonin (5-HT) receptor. A single commercial antagonist (SB-699551) has been widely used to investigate central nervous system (CNS) 5-HT 5A R function in neurological disorders, including pain. However, because SB-699551 has affinity for many 5-HTRs, lacks inactive property-matched controls, and has assay interference concerns, it has liabilities as a chemical probe. To better illuminate 5-HT 5A R function, we developed a probe set through iterative rounds of molecular docking, pharmacological testing, and optimization. Docking over six million lead-like molecules against a 5-HT 5A R homology model identified five mid-μM ligand starting points with unique scaffolds. Over multiple rounds of structure-based design and testing, a new quinoline scaffold with high affinity and enhanced selectivity for the 5-HT 5A R was developed, leading to UCSF678, a 42 nM arrestin-biased partial agonist at the 5-HT 5A R with a much more restricted off-target profile and decreased assay liabilities vs. SB-699551. Site-directed mutagenesis supported the docked pose of UCSF678, which was also consistent with recent published 5-HTR structures. Surprisingly, property-matched analogs of UCSF678 that were either inactive across 5-HTRs or retained affinity for UCSF678’s off-targets revealed that 5-HT 5A R engagement is nonessential for alleviating pain in a mouse model, contrary to previous studies using less-selective ligands. Relative to SB-699551, these molecules constitute a well-characterized and more selective probe set with which to study the function of the 5-HT 5A receptor. Table of Contents Graphic