학술논문

Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets
Document Type
article
Source
Nature Communications. 14(1)
Subject
Microbiology
Medical Microbiology
Biomedical and Clinical Sciences
Biological Sciences
Infectious Diseases
Prevention
Emerging Infectious Diseases
Vaccine Related
Influenza
Pneumonia & Influenza
Biodefense
Biotechnology
2.1 Biological and endogenous factors
2.2 Factors relating to the physical environment
Aetiology
Infection
Humans
Influenza A virus
Influenza
Human
Influenza A Virus
H5N1 Subtype
Influenza A Virus
H3N2 Subtype
Proteomics
Virus Replication
COVID-19
SARS-CoV-2
Antiviral Agents
Host-Pathogen Interactions
Language
Abstract
Influenza A Virus (IAV) is a recurring respiratory virus with limited availability of antiviral therapies. Understanding host proteins essential for IAV infection can identify targets for alternative host-directed therapies (HDTs). Using affinity purification-mass spectrometry and global phosphoproteomic and protein abundance analyses using three IAV strains (pH1N1, H3N2, H5N1) in three human cell types (A549, NHBE, THP-1), we map 332 IAV-human protein-protein interactions and identify 13 IAV-modulated kinases. Whole exome sequencing of patients who experienced severe influenza reveals several genes, including scaffold protein AHNAK, with predicted loss-of-function variants that are also identified in our proteomic analyses. Of our identified host factors, 54 significantly alter IAV infection upon siRNA knockdown, and two factors, AHNAK and coatomer subunit COPB1, are also essential for productive infection by SARS-CoV-2. Finally, 16 compounds targeting our identified host factors suppress IAV replication, with two targeting CDK2 and FLT3 showing pan-antiviral activity across influenza and coronavirus families. This study provides a comprehensive network model of IAV infection in human cells, identifying functional host targets for pan-viral HDT.