학술논문

Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
Document Type
article
Author
Satterstrom, F KyleKosmicki, Jack AWang, JiebiaoBreen, Michael SDe Rubeis, SilviaAn, Joon-YongPeng, MinshiCollins, RyanGrove, JakobKlei, LambertusStevens, ChristineReichert, JenniferMulhern, Maureen SArtomov, MykytaGerges, SherifSheppard, BrookeXu, XinyiBhaduri, AparnaNorman, UtkuBrand, HarrisonSchwartz, GraceNguyen, RachelGuerrero, Elizabeth EDias, CarolineConsortium, Autism SequencingAleksic, BrankoAnney, RichardBarbosa, MafaldaBishop, SomerBrusco, AlfredoBybjerg-Grauholm, JonasCarracedo, AngelChan, Marcus CYChiocchetti, Andreas GChung, Brian HYCoon, HilaryCuccaro, Michael LCurró, AuroraBernardina, Bernardo DallaDoan, RyanDomenici, EnricoDong, ShanFallerini, ChiaraFernández-Prieto, MontserratFerrero, Giovanni BattistaFreitag, Christine MFromer, MenachemGargus, J JayGeschwind, DanielGiorgio, ElisaGonzález-Peñas, JavierGuter, StephenHalpern, DanielleHansen-Kiss, EmilyHe, XinHerman, Gail EHertz-Picciotto, IrvaHougaard, David MHultman, Christina MIonita-Laza, IulianaJacob, SumaJamison, JesslynJugessur, AstanandKaartinen, MiiaKnudsen, Gun PeggyKolevzon, AlexanderKushima, ItaruLee, So LunLehtimäki, TerhoLim, Elaine TLintas, CarlaLipkin, W IanLopergolo, DiegoLopes, FátimaLudena, YuninMaciel, PatriciaMagnus, PerMahjani, BehrangMaltman, NellManoach, Dara SMeiri, GalMenashe, IdanMiller, JudithMinshew, NancyMontenegro, Eduarda MSMoreira, DanielleMorrow, Eric MMors, OleMortensen, Preben BoMosconi, MatthewMuglia, PierandreaNeale, Benjamin MNordentoft, MereteOzaki, NorioPalotie, AarnoParellada, MaraPassos-Bueno, Maria RitaPericak-Vance, MargaretPersico, Antonio MPessah, Isaac
Source
Cell. 180(3)
Subject
Biological Sciences
Bioinformatics and Computational Biology
Biomedical and Clinical Sciences
Genetics
Brain Disorders
Mental Health
Pediatric
Human Genome
Clinical Research
Autism
Intellectual and Developmental Disabilities (IDD)
Neurosciences
Aetiology
2.1 Biological and endogenous factors
Mental health
Neurological
Autistic Disorder
Case-Control Studies
Cell Lineage
Cerebral Cortex
Cohort Studies
Exome
Female
Gene Expression Regulation
Developmental
Gene Frequency
Genetic Predisposition to Disease
Humans
Male
Mutation
Missense
Neurobiology
Neurons
Phenotype
Sex Factors
Single-Cell Analysis
Exome Sequencing
Autism Sequencing Consortium
iPSYCH-Broad Consortium
autism spectrum disorder
cell type
cytoskeleton
excitatory neurons
excitatory-inhibitory balance
exome sequencing
genetics
inhibitory neurons
liability
neurodevelopment
Medical and Health Sciences
Developmental Biology
Biological sciences
Biomedical and clinical sciences
Language
Abstract
We present the largest exome sequencing study of autism spectrum disorder (ASD) to date (n = 35,584 total samples, 11,986 with ASD). Using an enhanced analytical framework to integrate de novo and case-control rare variation, we identify 102 risk genes at a false discovery rate of 0.1 or less. Of these genes, 49 show higher frequencies of disruptive de novo variants in individuals ascertained to have severe neurodevelopmental delay, whereas 53 show higher frequencies in individuals ascertained to have ASD; comparing ASD cases with mutations in these groups reveals phenotypic differences. Expressed early in brain development, most risk genes have roles in regulation of gene expression or neuronal communication (i.e., mutations effect neurodevelopmental and neurophysiological changes), and 13 fall within loci recurrently hit by copy number variants. In cells from the human cortex, expression of risk genes is enriched in excitatory and inhibitory neuronal lineages, consistent with multiple paths to an excitatory-inhibitory imbalance underlying ASD.