학술논문

CRISPR–Cas9 genome engineering of primary CD4+ T cells for the interrogation of HIV–host factor interactions
Document Type
article
Source
Nature Protocols. 14(1)
Subject
Medical Microbiology
Biomedical and Clinical Sciences
Immunology
Infectious Diseases
Biotechnology
HIV/AIDS
Genetics
2.1 Biological and endogenous factors
Aetiology
Infection
Antibodies
Antigens
CD
CD4-Positive T-Lymphocytes
CRISPR-Associated Protein 9
CRISPR-Cas Systems
Cell Nucleus
Clustered Regularly Interspaced Short Palindromic Repeats
Electroporation
Gene Editing
Genome
Human
HIV-1
High-Throughput Screening Assays
Host-Pathogen Interactions
Humans
Lymphocyte Activation
Primary Cell Culture
RNA
Guide
CRISPR-Cas Systems
Ribonucleoproteins
RNA
Guide
Chemical Sciences
Biological Sciences
Medical and Health Sciences
Bioinformatics
Language
Abstract
CRISPR-Cas9 gene-editing strategies have revolutionized our ability to engineer the human genome for robust functional interrogation of complex biological processes. We have recently adapted this technology for use in primary human CD4+ T cells to create a high-throughput platform for analyzing the role of host factors in HIV infection and pathogenesis. Briefly, CRISPR-Cas9 ribonucleoproteins (crRNPs) are synthesized in vitro and delivered to activated CD4+ T cells by nucleofection. These cells are then assayed for editing efficiency and expanded for use in downstream cellular, genetic, or protein-based assays. This platform supports the rapid, arrayed generation of multiple gene manipulations and is widely adaptable across culture conditions, infection protocols, and downstream applications. Here, we present detailed protocols for crRNP synthesis, primary T-cell culture, 96-well nucleofection, molecular validation, and HIV infection, and discuss additional considerations for guide and screen design, as well as crRNP multiplexing. Taken together, this procedure allows high-throughput identification and mechanistic interrogation of HIV host factors in primary CD4+ T cells by gene knockout, validation, and HIV spreading infection in as little as 2-3 weeks.