학술논문

Exploring uncertainty measures in convolutional neural network for semantic segmentation of oral cancer images
Document Type
article
Source
Journal of Biomedical Optics. 27(11)
Subject
Biomedical and Clinical Sciences
Engineering
Biomedical Engineering
Physical Sciences
Ophthalmology and Optometry
Atomic
Molecular and Optical Physics
Cancer
Dental/Oral and Craniofacial Disease
Humans
Uncertainty
Semantics
Bayes Theorem
Reproducibility of Results
Neural Networks
Computer
Image Processing
Computer-Assisted
Mouth Neoplasms
uncertainty measures of deep learning
oral cancer
semantic segmentation
Monte Carlo dropout
Bayesian deep learning
Optical Physics
Opthalmology and Optometry
Optics
Ophthalmology and optometry
Biomedical engineering
Atomic
molecular and optical physics
Language
Abstract
SignificanceOral cancer is one of the most prevalent cancers, especially in middle- and low-income countries such as India. Automatic segmentation of oral cancer images can improve the diagnostic workflow, which is a significant task in oral cancer image analysis. Despite the remarkable success of deep-learning networks in medical segmentation, they rarely provide uncertainty quantification for their output.AimWe aim to estimate uncertainty in a deep-learning approach to semantic segmentation of oral cancer images and to improve the accuracy and reliability of predictions.ApproachThis work introduced a UNet-based Bayesian deep-learning (BDL) model to segment potentially malignant and malignant lesion areas in the oral cavity. The model can quantify uncertainty in predictions. We also developed an efficient model that increased the inference speed, which is almost six times smaller and two times faster (inference speed) than the original UNet. The dataset in this study was collected using our customized screening platform and was annotated by oral oncology specialists.ResultsThe proposed approach achieved good segmentation performance as well as good uncertainty estimation performance. In the experiments, we observed an improvement in pixel accuracy and mean intersection over union by removing uncertain pixels. This result reflects that the model provided less accurate predictions in uncertain areas that may need more attention and further inspection. The experiments also showed that with some performance compromises, the efficient model reduced computation time and model size, which expands the potential for implementation on portable devices used in resource-limited settings.ConclusionsOur study demonstrates the UNet-based BDL model not only can perform potentially malignant and malignant oral lesion segmentation, but also can provide informative pixel-level uncertainty estimation. With this extra uncertainty information, the accuracy and reliability of the model’s prediction can be improved.