학술논문

The active DNA-PK holoenzyme occupies a tensed state in a staggered synaptic complex
Document Type
article
Source
Structure. 29(5)
Subject
Biochemistry and Cell Biology
Chemical Sciences
Biological Sciences
Genetics
Underpinning research
1.1 Normal biological development and functioning
Generic health relevance
Binding Sites
DNA End-Joining Repair
DNA-Activated Protein Kinase
HeLa Cells
Holoenzymes
Humans
Molecular Docking Simulation
Protein Binding
Synaptonemal Complex
Hela Cells
DNA repair
DNA-PK
crosslinking mass spectrometry
hydrogen/deuterium exchange
modeling
non-homologous end-joining
structure
synaptic complex
non-homologous end joining
Information and Computing Sciences
Biophysics
Biological sciences
Chemical sciences
Language
Abstract
In the non-homologous end-joining (NHEJ) of a DNA double-strand break, DNA ends are bound and protected by DNA-PK, which synapses across the break to tether the broken ends and initiate repair. There is little clarity surrounding the nature of the synaptic complex and the mechanism governing the transition to repair. We report an integrative structure of the synaptic complex at a precision of 13.5 Å, revealing a symmetric head-to-head arrangement with a large offset in the DNA ends and an extensive end-protection mechanism involving a previously uncharacterized plug domain. Hydrogen/deuterium exchange mass spectrometry identifies an allosteric pathway connecting DNA end-binding with the kinase domain that places DNA-PK under tension in the kinase-active state. We present a model for the transition from end-protection to repair, where the synaptic complex supports hierarchical processing of the ends and scaffold assembly, requiring displacement of the catalytic subunit and tension release through kinase activity.