학술논문

Interactome analysis illustrates diverse gene regulatory processes associated with LIN28A in human iPS cell-derived neural progenitor cells
Document Type
article
Source
iScience. 24(11)
Subject
Biochemistry and Cell Biology
Bioinformatics and Computational Biology
Biological Sciences
Stem Cell Research - Induced Pluripotent Stem Cell
Stem Cell Research - Embryonic - Human
Stem Cell Research - Nonembryonic - Human
Stem Cell Research - Induced Pluripotent Stem Cell - Human
Stem Cell Research - Nonembryonic - Non-Human
Stem Cell Research
Genetics
Regenerative Medicine
Biotechnology
Underpinning research
1.1 Normal biological development and functioning
Generic health relevance
Gene network
Molecular neuroscience
Omics
Stem cells research
LIN28A
interactome
neural progenitor cell
Language
Abstract
A single protein can be multifaceted depending on the cellular contexts and interacting molecules. LIN28A is an RNA-binding protein that governs developmental timing, cellular proliferation, differentiation, stem cell pluripotency, and metabolism. In addition to its best-known roles in microRNA biogenesis, diverse molecular roles have been recognized. In the nervous system, LIN28A is known to play critical roles in proliferation and differentiation of neural progenitor cells (NPCs). We profiled the endogenous LIN28A-interacting proteins in NPCs differentiated from human induced pluripotent stem (iPS) cells using immunoprecipitation and liquid chromatography-tandem mass spectrometry. We identified over 500 LIN28A-interacting proteins, including 156 RNA-independent interactors. Functions of these proteins span a wide range of gene regulatory processes. Prompted by the interactome data, we revealed that LIN28A may impact the subcellular distribution of its interactors and stress granule formation upon oxidative stress. Overall, our analysis opens multiple avenues for elaborating molecular roles and characteristics of LIN28A.