학술논문

Parallel measurement of dynamic changes in translation rates in single cells.
Document Type
article
Source
Nature Methods. 11(1)
Subject
5 Untranslated Regions
Amino Acid Motifs
Amino Acids
Animals
Cell Nucleus
Endoplasmic Reticulum
Fibroblasts
Genes
Reporter
HEK293 Cells
Humans
In Situ Hybridization
Fluorescence
Luminescent Proteins
Mice
Promoter Regions
Genetic
Protein Biosynthesis
Proteins
Pyrimidines
RNA
Messenger
Ribosomes
Signal Transduction
Single-Cell Analysis
TOR Serine-Threonine Kinases
Trimethoprim
Language
Abstract
Protein concentrations are often regulated by dynamic changes in translation rates. Nevertheless, it has been challenging to directly monitor changes in translation in living cells. We have developed a reporter system to measure real-time changes of translation rates in human or mouse individual cells by conjugating translation regulatory motifs to sequences encoding a nuclear targeted fluorescent protein and a controllable destabilization domain. Application of the method showed that individual cells undergo marked fluctuations in the translation rate of mRNAs whose 5 terminal oligopyrimidine (5 TOP) motif regulates the synthesis of ribosomal proteins. Furthermore, we show that small reductions in amino acid levels signal through different mTOR-dependent pathways to control TOP mRNA translation, whereas larger reductions in amino acid levels control translation through eIF2A. Our study demonstrates that dynamic measurements of single-cell activities of translation regulatory motifs can be used to identify and investigate fundamental principles of translation.