학술논문

A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae).
Document Type
article
Source
Scientific reports. 8(1)
Subject
Animals
Insect Proteins
Transcription Factors
DNA Transposable Elements
Genetics
Population
Genomics
Pest Control
Biological
Evolution
Molecular
Phylogeny
Gene Expression Regulation
RNA Interference
Insecticide Resistance
Multigene Family
Agriculture
Female
Male
Solanum tuberosum
Genome
Insect
Host-Parasite Interactions
Genetic Variation
Molecular Sequence Annotation
Coleoptera
Genetics
Population
Pest Control
Biological
Evolution
Molecular
Genome
Insect
Biochemistry and Cell Biology
Other Physical Sciences
Language
Abstract
The Colorado potato beetle is one of the most challenging agricultural pests to manage. It has shown a spectacular ability to adapt to a variety of solanaceaeous plants and variable climates during its global invasion, and, notably, to rapidly evolve insecticide resistance. To examine evidence of rapid evolutionary change, and to understand the genetic basis of herbivory and insecticide resistance, we tested for structural and functional genomic changes relative to other arthropod species using genome sequencing, transcriptomics, and community annotation. Two factors that might facilitate rapid evolutionary change include transposable elements, which comprise at least 17% of the genome and are rapidly evolving compared to other Coleoptera, and high levels of nucleotide diversity in rapidly growing pest populations. Adaptations to plant feeding are evident in gene expansions and differential expression of digestive enzymes in gut tissues, as well as expansions of gustatory receptors for bitter tasting. Surprisingly, the suite of genes involved in insecticide resistance is similar to other beetles. Finally, duplications in the RNAi pathway might explain why Leptinotarsa decemlineata has high sensitivity to dsRNA. The L. decemlineata genome provides opportunities to investigate a broad range of phenotypes and to develop sustainable methods to control this widely successful pest.