학술논문

The geometry of calix[3]pyrrole and the formation of the calix[3]pyrrole·F complex in solution.
Document Type
Article
Source
Theoretical Chemistry Accounts: Theory, Computation, & Modeling. May2023, Vol. 142 Issue 5, p1-12. 12p.
Subject
*PYRROLES
*SOLID geometry
*SYMMETRY groups
*DENSITY functional theory
*MOLECULAR dynamics
Language
ISSN
1432-881X
Abstract
The accurate determination of the spectral data for strained molecules is challenging, as their geometries in solid state and in solution may differ because the molecules undergo continuous dynamical changes between different conformations. Calix[3]pyrrole, the recently synthesized smallest calixpyrrole, has the Cs point group of symmetry in its crystal structure, despite showing a single chemical shift value for the N–H protons in solution, which suggests that the geometry of calix[3]pyrrole could take a time-averaged, bowl-shaped geometry having a C3v or C3 point group of symmetry in solution. Density functional theory calculations and molecular dynamics simulations showed the most stable geometry of calix[3]pyrrole in the Cs point group of symmetry, and continuous transformation among the equivalent geometries of calix[3]pyrrole. The rapid dynamical change among the conformations of calix[3]pyrrole in the Cs point group of symmetry is the reason behind the observed experimental chemical shift value. The presence of halide (X− = F−, Cl−, Br−, I−) anions can form stable, bowl-shaped calix[3]pyrrole·X− complexes, and the study on calix[3]pyrrole·F− showed that three NH···F hydrogen bonds are responsible for their stability. The chemical shift value for the N–H protons in calix[3]pyrrole·F− is highly deshielded, as the F− anion lowers electron density in the vicinity of these H-atoms. The consideration of dynamics is helpful in understanding the structure of strained molecules and associated spectral data. [ABSTRACT FROM AUTHOR]