학술논문

Genetic structure of the LXS panel of recombinant inbred mouse strains: a powerful resource for complex trait analysis.
Document Type
Article
Source
Mammalian Genome. Aug2004, Vol. 15 Issue 8, p637-647. 11p.
Subject
*MICROSATELLITE repeats
*X chromosome
*CHROMOSOMES
*NUCLEOTIDE sequence
*GENE mapping
*GENETIC techniques
Language
ISSN
0938-8990
Abstract
The set of LXS recombinant inbred (RI) strains is a new and exceptionally large mapping panel that is suitable for the analysis of complex traits with comparatively high power. This panel consists of 77 strains-more than twice the size of other RI sets- and will typically provide sufficient statistical power (ß?=?0.8) to map quantitative trait loci (QTLs) that account for ~25% of genetic variance with a genomewidep<0.05. To characterize the genetic architecture of this new set of RI strains, we genotyped 330 MIT microsatellite markers distributed on all autosomes and the X Chromosome and assembled error-checked meiotic recombination maps that have an average F2-adjusted marker spacing of ~4 cM. The LXS panel has a genetic structure consistent with random segregation and subsequent fixation of alleles, the expected 3-4 × map expansion, a low level of nonsyntenic association among loci, and complete independence among all 77 strains. Although the parental inbred strains-Inbred Long-Sleep (ILS) and Inbred Short-Sleep (ISS)-were derived originally by selection from an 8-way heterogeneous stock selected for differential sensitivity to sedative effects of ethanol, the LXS panel is also segregating for many other traits. Thus, the LXS panel provides a powerful new resource for mapping complex traits across many systems and disciplines and should prove to be of great utility in modeling the genetics of complex diseases in human populations. [ABSTRACT FROM AUTHOR]