학술논문

Integrative analysis of haplotype-resolved epigenomes across human tissues.
Document Type
Article
Source
Nature. 2/19/2015, Vol. 518 Issue 7539, p350-354. 5p.
Subject
*EPIGENOMICS
*HAPLOTYPES
*HEREDITY
*GENE expression
*IMMUNOPRECIPITATION
Language
ISSN
0028-0836
Abstract
Allelic differences between the two homologous chromosomes can affect the propensity of inheritance in humans; however, the extent of such differences in the human genome has yet to be fully explored. Here we delineate allelic chromatin modifications and transcriptomes among a broad set of human tissues, enabled by a chromosome-spanning haplotype reconstruction strategy. The resulting large collection of haplotype-resolved epigenomic maps reveals extensive allelic biases in both chromatin state and transcription, which show considerable variation across tissues and between individuals, and allow us to investigate cis-regulatory relationships between genes and their control sequences. Analyses of histone modification maps also uncover intriguing characteristics of cis-regulatory elements and tissue-restricted activities of repetitive elements. The rich data sets described here will enhance our understanding of the mechanisms by which cis-regulatory elements control gene expression programs. [ABSTRACT FROM AUTHOR]