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Nature: International weekly journal of science. 641(8062):401-418

Pardo-Palacios, Francisco J.; Wang, Dingjie; Reese, Fairlie; Diekhans, Mark; Carbonell-Sala, Sílvia; Williams, Brian; Loveland, Jane E.; De María, Maite; Adams, Matthew S.; Balderrama-Gutierrez, Gabriela; Behera, Amit K.; Gonzalez Martinez, Jose M.; Hunt, Toby; Lagarde, Julien; Liang, Cindy E.; Li, Haoran; Meade, Marcus Jerryd; Moraga Amador, David A.; Prjibelski, Andrey D.; Birol, Inanc; Bostan, Hamed; Brooks, Ashley M.; Çelik, Muhammed Hasan; Chen, Ying; Du, Mei R. M.; Felton, Colette; Göke, Jonathan; Hafezqorani, Saber; Herwig, Ralf; Kawaji, Hideya; Lee, Joseph; Li, Jian-Liang; Lienhard, Matthias; Mikheenko, Alla; Mulligan, Dennis; Nip, Ka Ming; Pertea, Mihaela; Ritchie, Matthew E.; Sim, Andre D.; Tang, Alison D.; Wan, Yuk Kei; Wang, Changqing; Wong, Brandon Y.; Yang, Chen; Barnes, If; Berry, Andrew E.; Capella-Gutierrez, Salvador; Cousineau, Alyssa; Dhillon, Namrita; Fernandez-Gonzalez, Jose M.; Ferrández-Peral, Luis; Garcia-Reyero, Natàlia; Götz, Stefan; Hernández-Ferrer, Carles; Kondratova, Liudmyla; Liu, Tianyuan; Martinez-Martin, Alessandra; Menor, Carlos; Mestre-Tomás, Jorge; Mudge, Jonathan M.; Panayotova, Nedka G.; Paniagua, Alejandro; Repchevsky, Dmitry; Ren, Xingjie; Rouchka, Eric; Saint-John, Brandon; Sapena, Enrique; Sheynkman, Leon; Smith, Melissa Laird; Suner, Marie-Marthe; Takahashi, Hazuki; Youngworth, Ingrid A.; Carninci, Piero; Denslow, Nancy D.; Guigó, Roderic; Hunter, Margaret E.; Maehr, Rene; Shen, Yin; Tilgner, Hagen U.; Wold, Barbara J.; Vollmers, Christopher; Frankish, Adam; Au, Kin Fai; Sheynkman, Gloria M.; Mortazavi, Ali; Conesa, Ana; Brooks, Angela N.

Nature Methods: Techniques for life scientists and chemists. 21(7):1349-1363

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Nature: International weekly journal of science. 630(8016):401-411

Joglekar, Anoushka; Hu, Wen; Zhang, Bei; Narykov, Oleksandr; Diekhans, Mark; Marrocco, Jordan; Balacco, Jennifer; Ndhlovu, Lishomwa C.; Milner, Teresa A.; Fedrigo, Olivier; Jarvis, Erich D.; Sheynkman, Gloria; Korkin, Dmitry; Ross, M. Elizabeth; Tilgner, Hagen U.

Nature Neuroscience. 27(6):1051-1063

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Genome Biol
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
GENOME BIOLOGY
r-IGTP. Repositorio Institucional de Producción Científica del Instituto de Investigación Germans Trias i Pujol
Institut de Recerca Germans Trias i Pujol (IGTP)
Genome Biology, Vol 25, Iss 1, Pp 1-46 (2024)
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Armstrong, Joel; Hickey, Glenn; Diekhans, Mark; Fiddes, Ian T.; Novak, Adam M.; Deran, Alden; Fang, Qi

Nature. November 12, 2020, Vol. 587 Issue 7833, p246, 6 p.

Mastoras, M.; Asri, M.; Hebbar, P.; Lucas, J.; Won, T.S.; Paten, B.; Brambrink, L.; Kolesnikov, A.; Cook, D.E.; Nattestad, M.; Chang, P.-C.; Carroll, A.; Shafin, K.; Tayoun, A.A.; Albracht, D.; Antonacci-Fulton, L.; Belter, E.A.; Cody, S.; Fulton, R.S.; Garza, J.; Graves-Lindsay, T.; Kremitzki, M.; Macias-Velasco, J.F.; Tomlinson, C.; Wang, T.; Allen, J.; Cheema, J.; Frankish, A.; Freeberg, M.A.; Haggerty, L.; Hossain, S.N.; Hunt, S.E.; Hunt, T.; Loveland, J.E.; Martin, F.J.; Mudge, J.M.; Sinha, S.; Suner, M.-M.; Tierney, J.A.S.; Tricomi, F.F.; Alsheikh-Ali, A.A.; Hashmi, M.A.; Nassir, N.; Uddin, M.; Andrews, C.; Dong, Z.; Fu, Q.; Jiang, J.; Zhuo, X.; Lawson, H.A.; Li, D.; Liu, T.; Markovic, C.; Xin, Z.; Xu, Z.; Zhang, W.; Antipov, D.; Hansen, N.F.; Kim, J.; Koren, S.; Phillippy, A.M.; Pickett, B.D.; Rhie, A.; Solar, S.J.; Walenz, B.P.; Asri, M.; Bender, H.D.; Blair, A.P.; Mc Cartney, A.M.; Cechova, M.; Chang, X.; Diekhans, M.; Eizenga, J.M.; Eskandar, P.; Gardner, J.M.V.; Haeussler, M.; Haussler, D.; Hebbar, P.; Hickey, G.; Hillaker, T.L.; Jafarzadeh, N.; Lorig-Roach, R.; Loucks, H.; Lucas, J.K.; Mastoras, M.; McNulty, B.; Menendez, J.M.; Miga, K.H.; Negi, S.; Novak, A.M.; Paten, B.; Clawson, H.; Radhakrishnan, A.; Raney, B.J.; Sirén, J.; Violich, I.; Ayllon, M.; Eichler, E.E.; Garcia, G.H.; Lin, J.; Munson, K.M.; Ni, L.; Porubsky, D.; Ren, L.; Stergachis, A.B.; Yoo, D.; Balacco, J.R.; Formenti, G.; Jain, N.; Jarvis, E.D.; Koo, B.; Medico, J.A.; Paez, S.; Sollitto, M.; Whelan, C.V.; Buonaiuto, S.; Cao, S.; Colonna, V.; Garrison, E.; Guarracino, A.; Marsico, F.L.; Pignata, L.; Prins, P.; Salehi, F.; Villani, F.; Bolognini, D.; Peano, C.; Raveane, A.; Soranzo, N.; Zunino, G.; Bonini, K.E.; Kenny, E.E.; Shemirani, R.; Wang, L.E.; Boucher, C.; Ferro, E.; Varki, R.; Bourque, G.; Carroll, A.; Chang, P.-C.; Shafin, K.; Cheng, H.; Ciofi, C.; Diroma, M.A.; Natali, C.; Conwell, H.C.; Ford, S.M.; Green, R.E.; Sacco, S.; Seligmann, W.E.; Ungaro, M.T.; Cook-Deegan, R.; Doerr, D.; Ebler, J.; Heringer, P.; Marschall, T.; Söylev, A.; Durbin, R.; Fiston-Lavier, A.-S.; Mayoud, C.; Shahatit, S.; Ford, W.W.; Gymrek, M.; Sehgal, A.; Fullerton, S.M.; Gao, Y.; Huang, N.; Li, H.; Marin, M.G.; Zhou, Y.; Garcia, O.A.; Garg, S.; Garrison, N.A.; Ghorbani, M.; Mokrab, Y.; Moosa, S.; Groza, C.; Hall, I.M.; Liao, W.-W.; Lu, S.; LoTempio, J.; Logsdon, G.A.; Langmead, B.; Schatz, M.C.; Shivakumar, V.S.; Lu, J.; Makova, K.D.; Minkina, A.; Vollger, M.R.; Mitchell, M.W.; Scheinfeldt, L.B.; Mohanty, S.K.; Smeds, L.; Monlong, J.; Moreno-Ochando, A.; Morishita, S.; Owa, C.; Suzuki, Y.; Mwaniki, N.; Pisanti, N.; Rautiainen, M.; Shabani, M.; Wang, C.; Wenger, A.M.; Ye, K.

In: Genome Research. (Genome Research, July 2025, 35(7):1595-1608)

Feng, S.; Stiller, J.; Deng, Y.; Armstrong, J.; Fang, Q.; Reeve, A.; Xie, D.; Chen, G.; Guo, C.; Faircloth, B.; Petersen, B.; Wang, Z.; Zhou, Q.; Diekhans, M.; Chen, W.; Andreu-Sánchez, S.; Margaryan, A.; Howard, J.; Parent, C.; Pacheco, G.; Sinding, M.; Puetz, L.; Cavill, E.; Ribeiro, Â.; Eckhart, L.; Fjeldså, J.; Hosner, P.; Brumfield, R.; Christidis, L.; Bertelsen, M.; Sicheritz-Ponten, T.; Tietze, D.; Robertson, B.; Song, G.; Borgia, G.; Claramunt, S.; Lovette, I.; Cowen, S.; Njoroge, P.; Dumbacher, J.; Ryder, O.; Fuchs, J.; Bunce, M.; Burt, D.; Cracraft, J.; Meng, G.; Hackett, S.; Ryan, P.; Jønsson, K.; Jamieson, I.; da Fonseca, R.; Braun, E.; Houde, P.; Mirarab, S.; Suh, A.; Hansson, B.; Ponnikas, S.; Sigeman, H.; Stervander, M.; Frandsen, P.; van der Zwan, H.; van der Sluis, R.; Visser, C.; Balakrishnan, C.; Clark, A.; Fitzpatrick, J.; Bowman, R.; Chen, N.; Cloutier, A.; Sackton, T.; Edwards, S.; Foote, D.; Shakya, S.; Sheldon, F.; Vignal, A.; Soares, A.; Shapiro, B.; González-Solís, J.; Ferrer-Obiol, J.; Rozas, J.; Riutort, M.; Tigano, A.; Friesen, V.; Dalén, L.; Urrutia, A.; Székely, T.; Liu, Y.; Campana, M.; Corvelo, A.; Fleischer, R.; Rutherford, K.; Gemmell, N.; Dussex, N.; Mouritsen, H.; Thiele, N.; Delmore, K.; Liedvogel, M.; Franke, A.; Hoeppner, M.; Krone, O.; Fudickar, A.; Milá, B.; Ketterson, E.; Fidler, A.; Friis, G.; Parody-Merino, Á.; Battley, P.; Cox, M.; Lima, N.; Prosdocimi, F.; Parchman, T.; Schlinger, B.; Loiselle, B.; Blake, J.; Lim, H.; Day, L.; Fuxjager, M.; Baldwin, M.; Braun, M.; Wirthlin, M.; Dikow, R.; Ryder, T.; Camenisch, G.; Keller, L.; DaCosta, J.; Hauber, M.; Louder, M.; Witt, C.; McGuire, J.; Mudge, J.; Megna, L.; Carling, M.; Wang, B.; Taylor, S.; Del-Rio, G.; Aleixo, A.; Vasconcelos, A.; Mello, C.; Weir, J.; Haussler, D.; Li, Q.; Yang, H.; Wang, J.; Lei, F.; Rahbek, C.; Gilbert, M.; Graves, G.; Jarvis, E.; authors, B.

Nature