부산대학교 도서관

Janes, Victoria A ; Matamoros, Sébastien ; Munk, Patrick ; Clausen, Philip T L C ; Koekkoek, Sylvie M ; Koster, Linda A M ; Jakobs, Marja E ; de Wever, Bob ; Visser, Caroline E ; Aarestrup, Frank M ; Lund, Ole ; de Jong, Menno D ; Bossuyt, Patrick M M ; Mende, Daniel R ; Schultsz, Constance

In The Lancet Microbe August 2022 3(8):e588-e597

Hallgren, Malte B; Clausen, Philip T L C; Aarestrup, Frank M

Biology Methods & Protocols. 2024, Vol. 9 Issue 1, p1-9. 9p.

Clausen, Philip T L C; Hallgren, Malte B; Overballe-Petersen, Søren; Marcelino, Vanessa R; Hasman, Henrik; Aarestrup, Frank M

NAR Genomics & Bioinformatics; Sep2025, Vol. 7 Issue 3, p1-10, 10p

Hallgren, Malte B; Overballe-Petersen, Søren; Lund, Ole; Hasman, Henrik; Clausen, Philip T L C

Biology Methods & Protocols. 2021, Vol. 6 Issue 1, p1-7. 7p.

Martiny, Hannah-Marie; Pyrounakis, Nikiforos; Petersen, Thomas N; Lukjančenko, Oksana; Aarestrup, Frank M; Clausen, Philip T L C; Munk, Patrick

Bioinformatics. Mar2024, Vol. 40 Issue 3, p1-8. 8p.

Shayo MJ; Department of Biomedical Science, School of Public Health, KCMC University, Moshi, Tanzania; Kilimanjaro Clinical Research Institute, Moshi, Tanzania; Department of Biological and Pre-Clinical Studies, Muhimbili University of Health and Allied Sciences, Tanzania. Electronic address: merianshayoe@gmail.com.; Kuchaka D; Kilimanjaro Clinical Research Institute, Moshi, Tanzania; The Nelson Mandela African Institution of Science and Technology, Arusha, Tanzania.; Beti M; Kilimanjaro Clinical Research Institute, Moshi, Tanzania.; Kimu P; Kilimanjaro Clinical Research Institute, Moshi, Tanzania.; Wadugu B; Kilimanjaro Clinical Research Institute, Moshi, Tanzania.; Jensen EEB; Technical University of Denmark, Denmark.; Kumburu H; Kilimanjaro Clinical Research Institute, Moshi, Tanzania.; Kazyoba P; National Institute for Medical Research, Tanzania.; Ali M; Zanzibar Health Research Institute, Tanzania.; Clausen PTLC; Technical University of Denmark, Denmark.; Muro F; Department of Biomedical Science, School of Public Health, KCMC University, Moshi, Tanzania; Kilimanjaro Clinical Research Institute, Moshi, Tanzania; Department of Community Health, KCMC, Moshi, Tanzania.; Mmbaga BT; Kilimanjaro Clinical Research Institute, Moshi, Tanzania; Department of Paediatric and Child Health, School of Medicine, KCMC University, Moshi, Tanzania.; Alifrangis M; University of Copenhagen, Denmark.; Aarestrup FM; Technical University of Denmark, Denmark.; Sonda T; Kilimanjaro Clinical Research Institute, Moshi, Tanzania.

Publisher: Academic Press Country of Publication: United States NLM ID: 0110674 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1096-0341 (Electronic) Linking ISSN: 00426822 NLM ISO Abbreviation: Virology Subsets: MEDLINE

Bioinformatics. Jan2023, Vol. 39 Issue 1, p1-5. 5p.

Schuele L; Department of Viroscience, Erasmus University Medical Center, Rotterdam, the Netherlands.; Masirika LM; Centre de Recherche en Sciences Naturelles de Lwiro, South-Kivu, Bukavu, Democratic Republic of the Congo.; Congo Outbreaks, Research for Development (CORD), South-Kivu, Bukavu, Democratic Republic of the Congo.; SaBio Instituto de Investigación en Recursos Cinegéticos IREC (Universidad de Castilla-La Mancha & CSIC), Ciudad Real, Spain.; Cassidy H; Department of Viroscience, Erasmus University Medical Center, Rotterdam, the Netherlands.; Clausen PTLC; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Lyngby, Denmark.; Zaeck LM; Department of Viroscience, Erasmus University Medical Center, Rotterdam, the Netherlands.; Boter M; Department of Viroscience, Erasmus University Medical Center, Rotterdam, the Netherlands.; Ndishimye P; Congo Outbreaks, Research for Development (CORD), South-Kivu, Bukavu, Democratic Republic of the Congo.; Stansile Research Organization, Kigali, Rwanda.; Research and Innovation Centre, African Institute for Mathematical Sciences (AIMS), Kigali, Rwanda.; Udahemuka JC; Congo Outbreaks, Research for Development (CORD), South-Kivu, Bukavu, Democratic Republic of the Congo.; Stansile Research Organization, Kigali, Rwanda.; Department of Veterinary Medicine, University of Rwanda, Nyagatare, Rwanda.; de Vries RD; Department of Viroscience, Erasmus University Medical Center, Rotterdam, the Netherlands.; Otani S; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Lyngby, Denmark.; Molenkamp R; Department of Viroscience, Erasmus University Medical Center, Rotterdam, the Netherlands.; Nieuwenhuijse DF; Department of Viroscience, Erasmus University Medical Center, Rotterdam, the Netherlands.; Mbiribindi JB; Congo Outbreaks, Research for Development (CORD), South-Kivu, Bukavu, Democratic Republic of the Congo.; Division Provinciale de la Santé, South-Kivu, Bukavu, Democratic Republic of the Congo.; Siangoli FB; Congo Outbreaks, Research for Development (CORD), South-Kivu, Bukavu, Democratic Republic of the Congo.; Division Provinciale de la Santé, South-Kivu, Bukavu, Democratic Republic of the Congo.; Koopmans M; Department of Viroscience, Erasmus University Medical Center, Rotterdam, the Netherlands.; Aarestrup FM; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Lyngby, Denmark.; Oude Munnink BB; Department of Viroscience, Erasmus University Medical Center, Rotterdam, the Netherlands.

Publisher: ASM Press Country of Publication: United States NLM ID: 101634614 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2165-0497 (Electronic) Linking ISSN: 21650497 NLM ISO Abbreviation: Microbiol Spectr Subsets: MEDLINE

Allesøe, Rosa L; Lemvigh, Camilla K; Phan, My V T; Clausen, Philip T L C; Florensa, Alfred F; Koopmans, Marion P G; Lund, Ole; Cotten, Matthew

Bioinformatics. 3/1/2021, Vol. 37 Issue 5, p705-710. 6p.

Hasman, Henrik; Clausen, Philip T L C; Kaya, Hülya; Hansen, Frank; Knudsen, Jenny Dahl; Wang, Mikala; Holzknecht, Barbara Juliane; Samulioniené, Jurgita; Røder, Bent L; Frimodt-Møller, Niels; Lund, Ole; Hammerum, Anette M

Journal of Antimicrobial Chemotherapy (JAC). Jun2019, Vol. 74 Issue 6, p1473-1476. 4p.

Munk P; National Food Institute, Technical University of Denmark, Lyngby, Denmark.; Yang D; Institute for Risk Assessment Sciences, Faculty of Veterinary Medicine, Utrecht University, The Netherlands, Utrecht.; Röder T; National Food Institute, Technical University of Denmark, Lyngby, Denmark.; Maier L; School of Biological Sciences, University of Edinburgh, Max Born Crescent, Edinburgh, United Kingdom.; Petersen TN; National Food Institute, Technical University of Denmark, Lyngby, Denmark.; Duarte ASR; National Food Institute, Technical University of Denmark, Lyngby, Denmark.; Clausen PTLC; National Food Institute, Technical University of Denmark, Lyngby, Denmark.; Brinch C; National Food Institute, Technical University of Denmark, Lyngby, Denmark.; Van Gompel L; Institute for Risk Assessment Sciences, Faculty of Veterinary Medicine, Utrecht University, The Netherlands, Utrecht.; Luiken R; Institute for Risk Assessment Sciences, Faculty of Veterinary Medicine, Utrecht University, The Netherlands, Utrecht.; Wagenaar JA; Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, The Netherlands, Utrecht.; Schmitt H; Institute for Risk Assessment Sciences, Faculty of Veterinary Medicine, Utrecht University, The Netherlands, Utrecht.; Heederik DJJ; Institute for Risk Assessment Sciences, Faculty of Veterinary Medicine, Utrecht University, The Netherlands, Utrecht.; Mevius DJ; Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, The Netherlands, Utrecht.; Wageningen Bioveterinary Research, Wageningen University & Research, Lelystad, The Netherlands.; Smit LAM; Institute for Risk Assessment Sciences, Faculty of Veterinary Medicine, Utrecht University, The Netherlands, Utrecht.; Bossers A; Institute for Risk Assessment Sciences, Faculty of Veterinary Medicine, Utrecht University, The Netherlands, Utrecht.; Wageningen Bioveterinary Research, Wageningen University & Research, Lelystad, The Netherlands.; Aarestrup FM; National Food Institute, Technical University of Denmark, Lyngby, Denmark.

Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101680636 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2379-5077 (Electronic) Linking ISSN: 23795077 NLM ISO Abbreviation: mSystems Subsets: MEDLINE

Marcelino VR; Marie Bashir Institute for Infectious Diseases and Biosecurity and Faculty of Medicine and Health, Sydney Medical School, Westmead Clinical School, The University of Sydney, Sydney, NSW, 2006, Australia. vrmarcelino@gmail.com.; Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Westmead, NSW, 2145, Australia. vrmarcelino@gmail.com.; School of Life & Environmental Sciences, Charles Perkins Centre, The University of Sydney, Sydney, NSW, 2006, Australia. vrmarcelino@gmail.com.; Clausen PTLC; National Food Institute, Technical University of Denmark, 2800, Kgs Lyngby, Denmark.; Buchmann JP; School of Life & Environmental Sciences, Charles Perkins Centre, The University of Sydney, Sydney, NSW, 2006, Australia.; Wille M; WHO Collaborating Centre for Reference and Research on Influenza, The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, 3000, Australia.; Iredell JR; Marie Bashir Institute for Infectious Diseases and Biosecurity and Faculty of Medicine and Health, Sydney Medical School, Westmead Clinical School, The University of Sydney, Sydney, NSW, 2006, Australia.; Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Westmead, NSW, 2145, Australia.; Westmead Hospital (Research and Education Network), Westmead, NSW, 2145, Australia.; Meyer W; Marie Bashir Institute for Infectious Diseases and Biosecurity and Faculty of Medicine and Health, Sydney Medical School, Westmead Clinical School, The University of Sydney, Sydney, NSW, 2006, Australia.; Westmead Hospital (Research and Education Network), Westmead, NSW, 2145, Australia.; Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Westmead, NSW, 2145, Australia.; Lund O; National Food Institute, Technical University of Denmark, 2800, Kgs Lyngby, Denmark.; Sorrell TC; Marie Bashir Institute for Infectious Diseases and Biosecurity and Faculty of Medicine and Health, Sydney Medical School, Westmead Clinical School, The University of Sydney, Sydney, NSW, 2006, Australia.; Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Westmead, NSW, 2145, Australia.; Holmes EC; Marie Bashir Institute for Infectious Diseases and Biosecurity and Faculty of Medicine and Health, Sydney Medical School, Westmead Clinical School, The University of Sydney, Sydney, NSW, 2006, Australia.; School of Life & Environmental Sciences, Charles Perkins Centre, The University of Sydney, Sydney, NSW, 2006, Australia.

Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Kumburu HH; Kilimanjaro Christian Medical Centre (KCMC), Tanzania.; Kilimanjaro Clinical Research Institute (KCRI), Sokoine Road, P. O. Box. 2236, Moshi, Tanzania.; Kilimanjaro Christian Medical University College (KCMUCo), 2240 Moshi Kilimanajro, Tanzania.; Shayo M; Kilimanjaro Christian Medical University College (KCMUCo), 2240 Moshi Kilimanajro, Tanzania.; van Zwetslaar M; Kilimanjaro Clinical Research Institute (KCRI), Sokoine Road, P. O. Box. 2236, Moshi, Tanzania.; Njau J; Kilimanjaro Clinical Research Institute (KCRI), Sokoine Road, P. O. Box. 2236, Moshi, Tanzania.; Kuchaka DJ; Kilimanjaro Clinical Research Institute (KCRI), Sokoine Road, P. O. Box. 2236, Moshi, Tanzania.; The Nelson Mandela African Institution of Science and Technology (NM-AIST), Tanzania.; Ignas IP; Kilimanjaro Clinical Research Institute (KCRI), Sokoine Road, P. O. Box. 2236, Moshi, Tanzania.; Wadugu B; Kilimanjaro Clinical Research Institute (KCRI), Sokoine Road, P. O. Box. 2236, Moshi, Tanzania.; Kasworm R; Machame Lutheran Hospital, Tanzania.; Masaki LJ; Machame Lutheran Hospital, Tanzania.; Hallgren MB; Technical University of Denmark (DTU), Denmark.; Clausen PTLC; Technical University of Denmark (DTU), Denmark.; Mmbaga BT; Kilimanjaro Christian Medical Centre (KCMC), Tanzania.; Kilimanjaro Clinical Research Institute (KCRI), Sokoine Road, P. O. Box. 2236, Moshi, Tanzania.; Kilimanjaro Christian Medical University College (KCMUCo), 2240 Moshi Kilimanajro, Tanzania.; Aarestrup FM; Technical University of Denmark (DTU), Denmark.; Sonda TB; Kilimanjaro Christian Medical Centre (KCMC), Tanzania.; Kilimanjaro Clinical Research Institute (KCRI), Sokoine Road, P. O. Box. 2236, Moshi, Tanzania.; Kilimanjaro Christian Medical University College (KCMUCo), 2240 Moshi Kilimanajro, Tanzania.

Publisher: Elsevier Ltd Country of Publication: England NLM ID: 101672560 Publication Model: eCollection Cited Medium: Print ISSN: 2405-8440 (Print) Linking ISSN: 24058440 NLM ISO Abbreviation: Heliyon Subsets: PubMed not MEDLINE

Aytan-Aktug D; National Food Institute, Technical University of Denmarkgrid.5170.3, Kongens Lyngby, Denmark.; Grigorjev V; National Food Institute, Technical University of Denmarkgrid.5170.3, Kongens Lyngby, Denmark.; Szarvas J; National Food Institute, Technical University of Denmarkgrid.5170.3, Kongens Lyngby, Denmark.; Clausen PTLC; National Food Institute, Technical University of Denmarkgrid.5170.3, Kongens Lyngby, Denmark.; Munk P; National Food Institute, Technical University of Denmarkgrid.5170.3, Kongens Lyngby, Denmark.; Nguyen M; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois, USA.; Data Science and Learning Division, Argonne National Laboratorygrid.187073.a, Argonne, Illinois, USA.; Northwestern Argonne Institute for Science and Engineering, Evanston, Illinois, USA.; Davis JJ; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois, USA.; Data Science and Learning Division, Argonne National Laboratorygrid.187073.a, Argonne, Illinois, USA.; Northwestern Argonne Institute for Science and Engineering, Evanston, Illinois, USA.; Aarestrup FM; National Food Institute, Technical University of Denmarkgrid.5170.3, Kongens Lyngby, Denmark.; Lund O; National Food Institute, Technical University of Denmarkgrid.5170.3, Kongens Lyngby, Denmark.

Publisher: ASM Press Country of Publication: United States NLM ID: 101634614 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2165-0497 (Electronic) Linking ISSN: 21650497 NLM ISO Abbreviation: Microbiol Spectr Subsets: MEDLINE

Clausen PTLC; Department of Bioinformatics, Technical University of Denmark, 2800, Kgs Lyngby, Denmark. plan@food.dtu.dk.; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, 2800, Kgs Lyngby, Denmark. plan@food.dtu.dk.; Aarestrup FM; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, 2800, Kgs Lyngby, Denmark.; Lund O; Department of Bioinformatics, Technical University of Denmark, 2800, Kgs Lyngby, Denmark.

Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

Aytan-Aktug D; National Food Institute, Technical University of Denmarkgrid.5170.3, Kgs. Lyngby, Denmark.; Clausen PTLC; National Food Institute, Technical University of Denmarkgrid.5170.3, Kgs. Lyngby, Denmark.; Szarvas J; National Food Institute, Technical University of Denmarkgrid.5170.3, Kgs. Lyngby, Denmark.; Munk P; National Food Institute, Technical University of Denmarkgrid.5170.3, Kgs. Lyngby, Denmark.; Otani S; National Food Institute, Technical University of Denmarkgrid.5170.3, Kgs. Lyngby, Denmark.; Nguyen M; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois, USA.; Data Science and Learning Division, Argonne National Laboratorygrid.187073.a, Argonne, Illinois, USA.; Davis JJ; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois, USA.; Data Science and Learning Division, Argonne National Laboratorygrid.187073.a, Argonne, Illinois, USA.; Northwestern Argonne Institute for Science and Engineering, Evanston, Illinois, USA.; Lund O; National Food Institute, Technical University of Denmarkgrid.5170.3, Kgs. Lyngby, Denmark.; Aarestrup FM; National Food Institute, Technical University of Denmarkgrid.5170.3, Kgs. Lyngby, Denmark.

Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101680636 Publication Model: Print-Electronic Cited Medium: Print ISSN: 2379-5077 (Print) Linking ISSN: 23795077 NLM ISO Abbreviation: mSystems

Meyer F; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany.; Braunschweig Integrated Centre of Systems Biology (BRICS), Technische Universität Braunschweig, Braunschweig, Germany.; Fritz A; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany.; Braunschweig Integrated Centre of Systems Biology (BRICS), Technische Universität Braunschweig, Braunschweig, Germany.; German Center for Infection Research (DZIF), Hannover-Braunschweig Site, Braunschweig, Germany.; Deng ZL; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany.; Braunschweig Integrated Centre of Systems Biology (BRICS), Technische Universität Braunschweig, Braunschweig, Germany.; Cluster of Excellence RESIST (EXC 2155), Hannover Medical School, Hannover, Germany.; Koslicki D; Pennsylvania State University, State College, PA, USA.; Lesker TR; German Center for Infection Research (DZIF), Hannover-Braunschweig Site, Braunschweig, Germany.; Helmholtz Centre for Infection Research, Braunschweig, Germany.; Gurevich A; Saint Petersburg State University, Saint Petersburg, Russia.; Robertson G; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany.; Braunschweig Integrated Centre of Systems Biology (BRICS), Technische Universität Braunschweig, Braunschweig, Germany.; Alser M; Department of Information Technology and Electrical Engineering, ETH Zürich, Zurich, Switzerland.; Antipov D; Center for Algorithmic Biotechnology, Saint Petersburg State University, Saint Petersburg, Russia.; Beghini F; Department CIBIO, University of Trento, Trento, Italy.; Bertrand D; Genome Institute of Singapore, Singapore, Singapore.; Brito JJ; University of Southern California, Los Angeles, CA, USA.; Brown CT; University of California, Davis, Davis, CA, USA.; Buchmann J; Institute for Biological Data Science, Heinrich-Heine-University, Düsseldorf, Germany.; Buluç A; Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; University of California, Berkeley, Berkeley, CA, USA.; Chen B; Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; University of California, Berkeley, Berkeley, CA, USA.; Chikhi R; Institut Pasteur, Paris, France.; Clausen PTLC; National Food Institute, Division of Global Surveillance, Technical University of Denmark, Lyngby, Denmark.; Cristian A; Drexel University, Philadelphia, PA, USA.; Google Inc., Philadelphia, PA, USA.; Dabrowski PW; Robert Koch-Institut, Berlin, Germany.; Hochschule für Technik und Wirtschaft Berlin, Berlin, Germany.; Darling AE; University of Technology Sydney, Sydney, Australia.; Egan R; DOE Joint Genome Institute, Berkeley, CA, USA.; Lawrence Berkeley National Laboratories, Berkeley, CA, USA.; Eskin E; University of California, Los Angeles, Los Angeles, CA, USA.; Georganas E; Intel Corporation, Santa Clara, CA, USA.; Goltsman E; DOE Joint Genome Institute, Berkeley, CA, USA.; Lawrence Berkeley National Laboratories, Berkeley, CA, USA.; Gray MA; Drexel University, Philadelphia, PA, USA.; Ecological and Evolutionary Signal-Processing and Informatics Laboratory, Philadelphia, PA, USA.; Hansen LH; University of Copenhagen, Department of Plant and Environmental Science, Frederiksberg, Denmark.; Hofmeyr S; Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; University of California, Berkeley, Berkeley, CA, USA.; Huang P; School of Computer Science, Fudan University, Shanghai, China.; Irber L; University of California, Davis, Davis, CA, USA.; Jia H; BGI-Shenzhen, Shenzhen, China.; Shenzhen Key Laboratory of Human Commensal Microorganisms and Health Research, BGI-Shenzhen, Shenzhen, China.; Jørgensen TS; Technical University of Denmark, Novo Nordisk Foundation Center for Biosustainability, Lyngby, Denmark.; Aarhus University, Department of Environmental Science, Roskilde, Denmark.; Kieser SD; Department of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland.; Swiss Institute of Bioinformatics, Geneva, Switzerland.; Klemetsen T; The Arctic University of Norway, Tromsø, Norway.; Kola A; Charité-Universitätsmedizin Berlin, Berlin, Germany.; Kolmogorov M; Department of Computer Science and Engineering, University of California San Diego, San Diego, CA, USA.; Korobeynikov A; Center for Algorithmic Biotechnology, Saint Petersburg State University, Saint Petersburg, Russia.; Department of Statistical Modelling, Saint Petersburg State University, Saint Petersburg, Russia.; Kwan J; University of Wisconsin-Madison, Madison, WI, USA.; LaPierre N; University of California, Los Angeles, Los Angeles, CA, USA.; Lemaitre C; Univ. Rennes, Inria, CNRS, IRISA, Rennes, France.; Li C; Genome Institute of Singapore, Singapore, Singapore.; Limasset A; Université Lille, CNRS, CRIStAL, Lille, France.; Malcher-Miranda F; Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, Germany.; Mangul S; University of Southern California, Los Angeles, CA, USA.; Marcelino VR; Sydney Medical School, The University of Sydney, Sydney, Australia.; Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Australia.; Marchet C; Université Lille, CNRS, CRIStAL, Lille, France.; Marijon P; Department of Computer Science, Inria, University of Lille, CNRS, Lille, France.; Meleshko D; Center for Algorithmic Biotechnology, Saint Petersburg State University, Saint Petersburg, Russia.; Mende DR; Amsterdam University Medical Center, Amsterdam, the Netherlands.; Milanese A; Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich, Switzerland.; Structural and Computational Biology Unit, EMBL, Heidelberg, Germany.; Nagarajan N; Genome Institute of Singapore, ASTAR, Singapore, Singapore.; National University of Singapore, Singapore, Singapore.; Nissen J; DTU Health Tech, Kongens, Lyngby, Denmark.; Nurk S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.; Oliker L; Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; University of California, Berkeley, Berkeley, CA, USA.; Paoli L; Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich, Switzerland.; Peterlongo P; Univ. Rennes, Inria, CNRS, IRISA, Rennes, France.; Piro VC; Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, Germany.; Porter JS; University of Virginia, Charlottesville, VA, USA.; Rasmussen S; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.; Rees ER; University of Wisconsin-Madison, Madison, WI, USA.; Reinert K; Institute for Bioinformatics, FU Berlin, Berlin, Germany.; Renard B; Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, Germany.; Bioinformatics Unit (MF1), Robert Koch Institute, Berlin, Germany.; Robertsen EM; The Arctic University of Norway, Tromsø, Norway.; Rosen GL; Drexel University, Philadelphia, PA, USA.; Ecological and Evolutionary Signal-Processing and Informatics Laboratory, Philadelphia, PA, USA.; Center for Biological Discovery from Big Data, Philadelphia, PA, USA.; Ruscheweyh HJ; Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich, Switzerland.; Sarwal V; University of California, Los Angeles, Los Angeles, CA, USA.; Segata N; Department CIBIO, University of Trento, Trento, Italy.; Seiler E; Institute for Bioinformatics, FU Berlin, Berlin, Germany.; Shi L; Florida Polytechnic University, Lakeland, FL, USA.; Sun F; Quantitative and Computational Biology Department, University of Southern California, Los Angeles, CA, USA.; Sunagawa S; Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich, Switzerland.; Sørensen SJ; University of Copenhagen, Copenhagen, Denmark.; Thomas A; DOE Joint Genome Institute, Berkeley, CA, USA.; University of British Columbia, Vancouver, British Columbia, Canada.; Tong C; Genome Institute of Singapore, Singapore, Singapore.; Trajkovski M; Department of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland.; Diabetes Center, Faculty of Medicine, University of Geneva, Geneva, Switzerland.; Tremblay J; Energy, Mining and Environment, National Research Council Canada, Montreal, Quebec, Canada.; Uritskiy G; Phase Genomics, Seattle, WA, USA.; Vicedomini R; Institut Pasteur, Paris, France.; Wang Z; School of Computer Science, Fudan University, Shanghai, China.; Wang Z; School of Mathematical Sciences, Fudan University, Shanghai, China.; Wang Z; Department of Energy Joint Genome Institute, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; School of Natural Sciences, University of California at Merced, Merced, CA, USA.; Warren A; University of Virginia, Charlottesville, VA, USA.; Willassen NP; The Arctic University of Norway, Tromsø, Norway.; Yelick K; Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; University of California, Berkeley, Berkeley, CA, USA.; You R; School of Computer Science, Fudan University, Shanghai, China.; Zeller G; Structural and Computational Biology Unit, EMBL, Heidelberg, Germany.; Zhao Z; Drexel University, Philadelphia, PA, USA.; Zhu S; Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, China.; Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education, Shanghai, China.; Zhu J; BGI-Shenzhen, Shenzhen, China.; Shenzhen Key Laboratory of Human Commensal Microorganisms and Health Research, BGI-Shenzhen, Shenzhen, China.; Garrido-Oter R; Max Planck Institute for Plant Breeding Research, Köln, Germany.; Gastmeier P; Charité-Universitätsmedizin Berlin, Berlin, Germany.; Hacquard S; Max Planck Institute for Plant Breeding Research, Köln, Germany.; Häußler S; Helmholtz Centre for Infection Research, Braunschweig, Germany.; Khaledi A; Helmholtz Centre for Infection Research, Braunschweig, Germany.; Maechler F; Charité-Universitätsmedizin Berlin, Berlin, Germany.; Mesny F; Max Planck Institute for Plant Breeding Research, Köln, Germany.; Radutoiu S; Aarhus University, Aarhus, Denmark.; Schulze-Lefert P; Max Planck Institute for Plant Breeding Research, Köln, Germany.; Smit N; Helmholtz Centre for Infection Research, Braunschweig, Germany.; Strowig T; Helmholtz Centre for Infection Research, Braunschweig, Germany.; Bremges A; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany.; German Center for Infection Research (DZIF), Hannover-Braunschweig Site, Braunschweig, Germany.; Sczyrba A; Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, Germany.; McHardy AC; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany. amc14@helmholtz-hzi.de.; Braunschweig Integrated Centre of Systems Biology (BRICS), Technische Universität Braunschweig, Braunschweig, Germany. amc14@helmholtz-hzi.de.; German Center for Infection Research (DZIF), Hannover-Braunschweig Site, Braunschweig, Germany. amc14@helmholtz-hzi.de.; Cluster of Excellence RESIST (EXC 2155), Hannover Medical School, Hannover, Germany. amc14@helmholtz-hzi.de.

Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

Clausen PT; Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kgs Lyngby, Denmark.; Zankari E; Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kgs Lyngby, Denmark Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, 2800 Kgs Lyngby, Denmark.; Aarestrup FM; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, 2800 Kgs Lyngby, Denmark.; Lund O; Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, 2800 Kgs Lyngby, Denmark lund@cbs.dtu.dk.

Publisher: Oxford University Press Country of Publication: England NLM ID: 7513617 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1460-2091 (Electronic) Linking ISSN: 03057453 NLM ISO Abbreviation: J Antimicrob Chemother Subsets: MEDLINE

Ahrenfeldt J; DTU Food. Technical University of Denmark, Kongens Lyngby, Denmark, 2800, Danmark.; Waisi M; DTU Food. Technical University of Denmark, Kongens Lyngby, Denmark, 2800, Danmark.; Loft IC; DTU Food. Technical University of Denmark, Kongens Lyngby, Denmark, 2800, Danmark.; Clausen PTLC; DTU Food. Technical University of Denmark, Kongens Lyngby, Denmark, 2800, Danmark.; Allesøe R; DTU Food. Technical University of Denmark, Kongens Lyngby, Denmark, 2800, Danmark.; Szarvas J; DTU Food. Technical University of Denmark, Kongens Lyngby, Denmark, 2800, Danmark.; Hendriksen RS; DTU Food. Technical University of Denmark, Kongens Lyngby, Denmark, 2800, Danmark.; Aarestrup FM; DTU Food. Technical University of Denmark, Kongens Lyngby, Denmark, 2800, Danmark.; Lund O; DTU Food. Technical University of Denmark, Kongens Lyngby, Denmark, 2800, Danmark. olund@food.dtu.dk.

Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

Johnsen CH; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby, Denmark.; Clausen PTLC; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby, Denmark.; Aarestrup FM; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby, Denmark.; Lund O; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kongens Lyngby, Denmark.

Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE