학술논문
Exclusion principle between the physicochemical properties of complementary nucleobases and symmetry breaking in double-stranded DNA conformations.
Document Type
Journal
Author
Hernandez-Cabrera, F. (MEX-UANLPM) AMS Author Profile; Rodríguez-Gutiérrez, R. (MEX-UANLPM) AMS Author Profile; Almaguer, Francisco Javier (MEX-UANLPM) AMS Author Profile; Grimaldo-Reyna, M. E. (MEX-UANLPM) AMS Author Profile
Source
Subject
92 Biology and other natural sciences -- 92D Genetics and population dynamics
92D20Protein sequences, DNA sequences
92D20
Language
English
Abstract
Summary: ``The information contained in DNA is encoded in a doublehelix formed by two antiparallel and complementary sequences ofnucleotides, which are stabilized by hydrogen bonds. At physiologicalconditions, each nucleobase possesses three main characteristics;molecular structure, functional group, and orientation in the doublehelix. These properties produce steric constraints that allow onlycomplementary interactions between nucleobase pairs to form double ortriple hydrogen bonds. In this work, a mathematical model is proposedto describe the pairing interactions between nucleobases according totheir physicochemical properties (structure, functional group andorientation). The results suggest that stable hydrogen bonds derivedfrom nucleobase interactions can be represented by a set of 4 hermitianmatrices and a Clifford Algebra $Cl(4,0)$. Moreover, it is shown thatthe allowed interactions between pairs of nucleobases enable theformulation of an exclusion principle between the states of theobservables. Finally, the mathematical representation of the hydrogenbonding between complementary nucleobases suggests a preferentialorientation (chirality), which could be associated with the majorgroove in the double helix structure of B-DNA.''