학술논문

Discovery and Hit-to-Lead Optimization of Benzothiazole Scaffold-Based DNA Gyrase Inhibitors with Potent Activity against Acinetobacter baumannii and Pseudomonas aeruginosa
Document Type
Source
Journal of Medicinal Chemistry. 66(2):1380-1425
Subject
antiinfective agent
benzothiazole derivative
DNA topoisomerase (ATP hydrolysing)
gyrase inhibitor
Acinetobacter baumannii
chemistry
Escherichia coli
human
metabolism
microbial sensitivity test
Pseudomonas aeruginosa
Anti-Bacterial Agents
Benzothiazoles
DNA Gyrase
Humans
Microbial Sensitivity Tests
Topoisomerase II Inhibitors
Language
English
ISSN
0022-2623
1520-4804
Abstract
We have developed compounds with a promising activity against Acinetobacter baumannii and Pseudomonas aeruginosa, which are both on the WHO priority list of antibiotic-resistant bacteria. Starting from DNA gyrase inhibitor 1, we identified compound 27, featuring a 10-fold improved aqueous solubility, a 10-fold improved inhibition of topoisomerase IV from A. baumannii and P. aeruginosa, a 10-fold decreased inhibition of human topoisomerase IIα, and no cross-resistance to novobiocin. Cocrystal structures of 1 in complex with Escherichia coli GyrB24 and (S)-27 in complex with A. baumannii GyrB23 and P. aeruginosa GyrB24 revealed their binding to the ATP-binding pocket of the GyrB subunit. In further optimization steps, solubility, plasma free fraction, and other ADME properties of 27 were improved by fine-tuning of lipophilicity. In particular, analogs of 27 with retained anti-Gram-negative activity and improved plasma free fraction were identified. The series was found to be nongenotoxic, nonmutagenic, devoid of mitochondrial toxicity, and possessed no ion channel liabilities.