학술논문

Genomic characterization of high-risk Escherichia coli and Enterobacter hormaechei clones recovered from a single tertiary-care hospital in Pakistan
Document Type
Source
Journal of Applied Microbiology. 132(5):3907-3914
Subject
antimicrobial resistance
bla
(NDM-1)
Enterobacterales
ESBL
genomics
Pakistan
Language
English
Abstract
Aims: Spread of carbapenem-resistant Enterobacterales have become a global problem. We characterized extended-spectrum beta-lactamase (ESBL)-producing Enterobacterales from urinary tract infections cases from Allied Hospital Faisalabad, Pakistan.Methods and Results: Eleven (22%, 11/50) ESBL-producing Enterobacterales (Escherichia coli; n = 10 and Enterobacter hormaechei; n = 1) were recovered and processed through VITEK-2, PCR, rep-PCR followed by whole-genome sequencing (WGS) of ESBL-producing Ent. hormaechei and carbapenem-resistant E. coli isolates. Plasmid transferability of bla(NDM-1)-producers was assayed by conjugation experiments. All ESBL strains carried the bla(CTX-M-15) gene. Of these bla(CTX-M-15) producing E. coli, four also carried bla(NDM-1) located on transferable plasmids. All E. coli strains belonged to ST448 and displayed similar genetic features including genes for antimicrobial resistance, heavy metal, biocides and virulence. Genomic features of a multidrug-resistant (MDR) Ent. hormaechei were also reported for the first time in Pakistan.Conclusion: Our findings indicate that bla(NDM-1) producing E. coli ST448 is a multidrug, heavy metals and biocides-resistant strain. Therefore, the screening of these isolates may be effective in limiting the MDR bacteria spread in hospitalized patients and within the community.Significance and Impact of this Study: Spread of multi-drug-resistant ESBL-producing bacteria in the clinical settings of Pakistan is a serious challenge and further limiting treatment options in the country. WGS could be used as a tool in the nationwide antibiotic surveillance programme to explore insights of spread and outbreak.