학술논문

Visualization of multi-property landscapes for compound selection and optimization
Document Type
Original Paper
Source
Journal of Computer-Aided Molecular Design: Incorporating Perspectives in Drug Discovery and Design. August 2015 29(8):695-705
Subject
Compound optimization
Activity landscapes
Structure–property relationships
Multi-objective optimization
Multi-property landscapes
Visualization
Language
English
ISSN
0920-654X
1573-4951
Abstract
Compound optimization generally requires considering multiple properties in concert and reaching a balance between them. Computationally, this process can be supported by multi-objective optimization methods that produce numerical solutions to an optimization task. Since a variety of comparable multi-property solutions are usually obtained further prioritization is required. However, the underlying multi-dimensional property spaces are typically complex and difficult to rationalize. Herein, an approach is introduced to visualize multi-property landscapes by adapting the concepts of star and parallel coordinates from computer graphics. The visualization method is designed to complement multi-objective compound optimization. We show that visualization makes it possible to further distinguish between numerically equivalent optimization solutions and helps to select drug-like compounds from multi-dimensional property spaces. The methodology is intuitive, applicable to a wide range of chemical optimization problems, and made freely available to the scientific community.