학술논문
Multi-ancestry genome-wide association study of kidney cancer identifies 63 susceptibility regions
Document Type
Original Paper
Author
Purdue, Mark P.; Dutta, Diptavo; Machiela, Mitchell J.; Gorman, Bryan R.; Winter, Timothy; Okuhara, Dayne; Cleland, Sara; Ferreiro-Iglesias, Aida; Scheet, Paul; Liu, Aoxing; Wu, Chao; Antwi, Samuel O.; Larkin, James; Zequi, Stênio C.; Sun, Maxine; Hikino, Keiko; Hajiran, Ali; Lawson, Keith A.; Cárcano, Flavio; Blanchet, Odile; Shuch, Brian; Nepple, Kenneth G.; Margue, Gaëlle; Sundi, Debasish; Diver, W. Ryan; Folgueira, Maria A. A. K.; van Bokhoven, Adrie; Neffa, Florencia; Brown, Kevin M.; Hofmann, Jonathan N.; Rhee, Jongeun; Yeager, Meredith; Cole, Nathan R.; Hicks, Belynda D.; Manning, Michelle R.; Hutchinson, Amy A.; Rothman, Nathaniel; Huang, Wen-Yi; Linehan, W. Marston; Lori, Adriana; Ferragu, Matthieu; Zidane-Marinnes, Merzouka; Serrano, Sérgio V.; Magnabosco, Wesley J.; Vilas, Ana; Decia, Ricardo; Carusso, Florencia; Graham, Laura S.; Anderson, Kyra; Bilen, Mehmet A.; Arciero, Cletus; Pellegrin, Isabelle; Ricard, Solène; Scelo, Ghislaine; Banks, Rosamonde E.; Vasudev, Naveen S.; Soomro, Naeem; Stewart, Grant D.; Adeyoju, Adebanji; Bromage, Stephen; Hrouda, David; Gibbons, Norma; Patel, Poulam; Sullivan, Mark; Protheroe, Andrew; Nugent, Francesca I.; Fournier, Michelle J.; Zhang, Xiaoyu; Martin, Lisa J.; Komisarenko, Maria; Eisen, Timothy; Cunningham, Sonia A.; Connolly, Denise C.; Uzzo, Robert G.; Zaridze, David; Mukeria, Anush; Holcatova, Ivana; Hornakova, Anna; Foretova, Lenka; Janout, Vladimir; Mates, Dana; Jinga, Viorel; Rascu, Stefan; Mijuskovic, Mirjana; Savic, Slavisa; Milosavljevic, Sasa; Gaborieau, Valérie; Abedi-Ardekani, Behnoush; McKay, James; Johansson, Mattias; Phouthavongsy, Larry; Hayman, Lindsay; Li, Jason; Lungu, Ilinca; Bezerra, Stephania M.; Souza, Aline G.; Sares, Claudia T. G.; Reis, Rodolfo B.; Gallucci, Fabio P.; Cordeiro, Mauricio D.; Pomerantz, Mark; Lee, Gwo-Shu M.; Freedman, Matthew L.; Jeong, Anhyo; Greenberg, Samantha E.; Sanchez, Alejandro; Thompson, R. Houston; Sharma, Vidit; Thiel, David D.; Ball, Colleen T.; Abreu, Diego; Lam, Elaine T.; Nahas, William C.; Master, Viraj A.; Patel, Alpa V.; Bernhard, Jean-Christophe; Freedman, Neal D.; Bigot, Pierre; Reis, Rui M.; Colli, Leandro M.; Finelli, Antonio; Manley, Brandon J.; Terao, Chikashi; Choueiri, Toni K.; Carraro, Dirce M.; Houlston, Richard; Eckel-Passow, Jeanette E.; Abbosh, Philip H.; Ganna, Andrea; Brennan, Paul; Gu, Jian; Chanock, Stephen J.
Source
Nature Genetics. 56(5):809-818
Subject
Language
English
ISSN
1061-4036
1546-1718
1546-1718
Abstract
Here, in a multi-ancestry genome-wide association study meta-analysis of kidney cancer (29,020 cases and 835,670 controls), we identified 63 susceptibility regions (50 novel) containing 108 independent risk loci. In analyses stratified by subtype, 52 regions (78 loci) were associated with clear cell renal cell carcinoma (RCC) and 6 regions (7 loci) with papillary RCC. Notably, we report a variant common in African ancestry individuals (rs7629500) in the 3′ untranslated region of VHL, nearly tripling clear cell RCC risk (odds ratio 2.72, 95% confidence interval 2.23–3.30). In cis-expression quantitative trait locus analyses, 48 variants from 34 regions point toward 83 candidate genes. Enrichment of hypoxia-inducible factor-binding sites underscores the importance of hypoxia-related mechanisms in kidney cancer. Our results advance understanding of the genetic architecture of kidney cancer, provide clues for functional investigation and enable generation of a validated polygenic risk score with an estimated area under the curve of 0.65 (0.74 including risk factors) among European ancestry individuals.
A multi-ancestry genome-wide association meta-analysis of kidney cancer identifies 63 regions associated with disease susceptibility including one locus that was associated with increased risk in individuals with African ancestry.
A multi-ancestry genome-wide association meta-analysis of kidney cancer identifies 63 regions associated with disease susceptibility including one locus that was associated with increased risk in individuals with African ancestry.