학술논문

Interspecies transcriptomics identify genes that underlie disproportionate foot growth in jerboas
Document Type
article
Source
Current Biology. 32(2)
Subject
Biological Sciences
Bioinformatics and Computational Biology
Ecology
Genetics
Biotechnology
Pediatric
1.1 Normal biological development and functioning
Underpinning research
Musculoskeletal
Animals
Extremities
Foot
Mice
Rodentia
Transcription Factors
Transcriptome
evolution of development
limb development
skeletal growth
skeletal proportion
Medical and Health Sciences
Psychology and Cognitive Sciences
Developmental Biology
Biological sciences
Biomedical and clinical sciences
Psychology
Language
Abstract
Despite the great diversity of vertebrate limb proportion and our deep understanding of the genetic mechanisms that drive skeletal elongation, little is known about how individual bones reach different lengths in any species. Here, we directly compare the transcriptomes of homologous growth cartilages of the mouse (Mus musculus) and bipedal jerboa (Jaculus jaculus), the latter of which has "mouse-like" arms but extremely long metatarsals of the feet. Intersecting gene-expression differences in metatarsals and forearms of the two species revealed that about 10% of orthologous genes are associated with the disproportionately rapid elongation of neonatal jerboa feet. These include genes and enriched pathways not previously associated with endochondral elongation as well as those that might diversify skeletal proportion in addition to their known requirements for bone growth throughout the skeleton. We also identified transcription regulators that might act as "nodes" for sweeping differences in genome expression between species. Among these, Shox2, which is necessary for proximal limb elongation, has gained expression in jerboa metatarsals where it has not been detected in other vertebrates. We show that Shox2 is sufficient to increase mouse distal limb length, and a nearby putative cis-regulatory region is preferentially accessible in jerboa metatarsals. In addition to mechanisms that might directly promote growth, we found evidence that jerboa foot elongation may occur in part by de-repressing latent growth potential. The genes and pathways that we identified here provide a framework to understand the modular genetic control of skeletal growth and the remarkable malleability of vertebrate limb proportion.