학술논문

Exome sequencing study in patients with multiple sclerosis reveals variants associated with disease course
Document Type
article
Source
Journal of Neuroinflammation. 15(1)
Subject
Biomedical and Clinical Sciences
Neurosciences
Immunology
Autoimmune Disease
Human Genome
Multiple Sclerosis
Neurodegenerative
Genetics
Brain Disorders
Clinical Research
4.2 Evaluation of markers and technologies
Detection
screening and diagnosis
Aetiology
2.1 Biological and endogenous factors
Neurological
Brain
Carboxypeptidases A
Cohort Studies
Disease Progression
Female
Gene Frequency
Genetic Predisposition to Disease
Genotype
Humans
Immunoglobulins
Male
Nerve Tissue Proteins
Polymorphism
Single Nucleotide
RNA
Messenger
Exome Sequencing
Multiple sclerosis
Disease course
Exome sequencing
Polymorphisms
CPXM2
IGSF9B
NLRP9
Clinical Sciences
Neurology & Neurosurgery
Language
Abstract
BackgroundIt remains unclear whether disease course in multiple sclerosis (MS) is influenced by genetic polymorphisms. Here, we aimed to identify genetic variants associated with benign and aggressive disease courses in MS patients.MethodsMS patients were classified into benign and aggressive phenotypes according to clinical criteria. We performed exome sequencing in a discovery cohort, which included 20 MS patients, 10 with benign and 10 with aggressive disease course, and genotyping in 2 independent validation cohorts. The first validation cohort encompassed 194 MS patients, 107 with benign and 87 with aggressive phenotypes. The second validation cohort comprised 257 patients, of whom 224 patients had benign phenotypes and 33 aggressive disease courses. Brain immunohistochemistries were performed using disease course associated genes antibodies.ResultsBy means of single-nucleotide polymorphism (SNP) detection and comparison of allele frequencies between patients with benign and aggressive phenotypes, a total of 16 SNPs were selected for validation from the exome sequencing data in the discovery cohort. Meta-analysis of genotyping results in two validation cohorts revealed two polymorphisms, rs28469012 and rs10894768, significantly associated with disease course. SNP rs28469012 is located in CPXM2 (carboxypeptidase X, M14 family, member 2) and was associated with aggressive disease course (uncorrected p value