학술논문

Assessing the contribution of rare variants to complex trait heritability from whole-genome sequence data
Document Type
article
Source
Nature Genetics. 54(3)
Subject
Human Genome
Genetics
2.1 Biological and endogenous factors
Aetiology
Generic health relevance
Alleles
Genome-Wide Association Study
Humans
Linkage Disequilibrium
Multifactorial Inheritance
Polymorphism
Single Nucleotide
TOPMed Anthropometry Working Group
NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium
Biological Sciences
Medical and Health Sciences
Developmental Biology
Language
Abstract
Analyses of data from genome-wide association studies on unrelated individuals have shown that, for human traits and diseases, approximately one-third to two-thirds of heritability is captured by common SNPs. However, it is not known whether the remaining heritability is due to the imperfect tagging of causal variants by common SNPs, in particular whether the causal variants are rare, or whether it is overestimated due to bias in inference from pedigree data. Here we estimated heritability for height and body mass index (BMI) from whole-genome sequence data on 25,465 unrelated individuals of European ancestry. The estimated heritability was 0.68 (standard error 0.10) for height and 0.30 (standard error 0.10) for body mass index. Low minor allele frequency variants in low linkage disequilibrium (LD) with neighboring variants were enriched for heritability, to a greater extent for protein-altering variants, consistent with negative selection. Our results imply that rare variants, in particular those in regions of low linkage disequilibrium, are a major source of the still missing heritability of complex traits and disease.