학술논문

The power of genetic diversity in genome-wide association studies of lipids
Document Type
article
Author
Graham, Sarah EClarke, Shoa LWu, Kuan-Han HKanoni, StavroulaZajac, Greg JMRamdas, ShwetaSurakka, IdaNtalla, IoannaVedantam, SailajaWinkler, Thomas WLocke, Adam EMarouli, EiriniHwang, Mi YeongHan, SoheeNarita, AkiraChoudhury, AnanyoBentley, Amy REkoru, KennethVerma, AnuragTrivedi, BhaviMartin, Hilary CHunt, Karen AHui, QinKlarin, DerekZhu, XiangThorleifsson, GudmarHelgadottir, AnnaGudbjartsson, Daniel FHolm, HilmaOlafsson, IsleifurAkiyama, MasatoSakaue, SaoriTerao, ChikashiKanai, MasahiroZhou, WeiBrumpton, Ben MRasheed, HumairaRuotsalainen, Sanni EHavulinna, Aki SVeturi, YogasudhaFeng, QiPingRosenthal, Elisabeth ALingren, ToddPacheco, Jennifer AllenPendergrass, Sarah AHaessler, JeffreyGiulianini, FrancoBradford, YukiMiller, Jason ECampbell, ArchieLin, KuangMillwood, Iona YHindy, GeorgeRasheed, AsifFaul, Jessica DZhao, WeiWeir, David RTurman, ConstanceHuang, HongyanGraff, MariaelisaMahajan, AnubhaBrown, Michael RZhang, WeihuaYu, KetianSchmidt, Ellen MPandit, AnitaGustafsson, StefanYin, XianyongLuan, Jian’anZhao, Jing-HuaMatsuda, FumihikoJang, Hye-MiYoon, KyungheonMedina-Gomez, CarolinaPitsillides, AchilleasHottenga, Jouke JanWillemsen, GonnekeWood, Andrew RJi, YingjiGao, ZishanHaworth, SimonMitchell, Ruth EChai, Jin FangAadahl, MetteYao, JieManichaikul, AniWarren, Helen RRamirez, JuliaBork-Jensen, JetteKårhus, Line LGoel, AnujSabater-Lleal, MariaNoordam, RaymondSidore, CarloFiorillo, EdoardoMcDaid, Aaron FMarques-Vidal, PedroWielscher, MatthiasTrompet, StellaSattar, Naveed
Source
Nature. 600(7890)
Subject
Heart Disease
Prevention
Human Genome
Genetics
Cardiovascular
2.1 Biological and endogenous factors
Aetiology
Good Health and Well Being
Cardiovascular Diseases
Genetic Predisposition to Disease
Genome-Wide Association Study
Humans
Linkage Disequilibrium
Multifactorial Inheritance
Polymorphism
Single Nucleotide
Population Groups
VA Million Veteran Program
Global Lipids Genetics Consortium*
General Science & Technology
Language
Abstract
Increased blood lipid levels are heritable risk factors of cardiovascular disease with varied prevalence worldwide owing to different dietary patterns and medication use1. Despite advances in prevention and treatment, in particular through reducing low-density lipoprotein cholesterol levels2, heart disease remains the leading cause of death worldwide3. Genome-wideassociation studies (GWAS) of blood lipid levels have led to important biological and clinical insights, as well as new drug targets, for cardiovascular disease. However, most previous GWAS4-23 have been conducted in European ancestry populations and may have missed genetic variants that contribute to lipid-level variation in other ancestry groups. These include differences in allele frequencies, effect sizes and linkage-disequilibrium patterns24. Here we conduct a multi-ancestry, genome-wide genetic discovery meta-analysis of lipid levels in approximately 1.65 million individuals, including 350,000 of non-European ancestries. We quantify the gain in studying non-European ancestries and provide evidence to support the expansion of recruitment of additional ancestries, even with relatively small sample sizes. We find that increasing diversity rather than studying additional individuals of European ancestry results in substantial improvements in fine-mapping functional variants and portability of polygenic prediction (evaluated in approximately 295,000 individuals from 7 ancestry groupings). Modest gains in the number of discovered loci and ancestry-specific variants were also achieved. As GWAS expand emphasis beyond the identification of genes and fundamental biology towards the use of genetic variants for preventive and precision medicine25, we anticipate that increased diversity of participants will lead to more accurate and equitable26 application of polygenic scores in clinical practice.