학술논문

Comparative cellular analysis of motor cortex in human, marmoset and mouse
Document Type
article
Author
Bakken, Trygve EJorstad, Nikolas LHu, QiwenLake, Blue BTian, WeiKalmbach, Brian ECrow, MeganHodge, Rebecca DKrienen, Fenna MSorensen, Staci AEggermont, JeroenYao, ZizhenAevermann, Brian DAldridge, Andrew IBartlett, AnnaBertagnolli, DarrenCasper, TamaraCastanon, Rosa GCrichton, KirstenDaigle, Tanya LDalley, RachelDee, NickDembrow, NikolaiDiep, DinhDing, Song-LinDong, WeixiuFang, RongxinFischer, StephanGoldman, MelissaGoldy, JeffGraybuck, Lucas THerb, Brian RHou, XiaomengKancherla, JayaramKroll, MatthewLathia, Kananvan Lew, BaldurLi, Yang EricLiu, Christine SLiu, HanqingLucero, Jacinta DMahurkar, AnupMcMillen, DelissaMiller, Jeremy AMoussa, MarmarNery, Joseph RNicovich, Philip RNiu, Sheng-YongOrvis, JoshuaOsteen, Julia KOwen, ScottPalmer, Carter RPham, ThanhPlongthongkum, NonglukPoirion, OlivierReed, Nora MRimorin, ChristineRivkin, AngelineRomanow, William JSedeño-Cortés, Adriana ESiletti, KimberlySomasundaram, SarojaSulc, JosefTieu, MichaelTorkelson, AmyTung, HermanWang, XinxinXie, FangmingYanny, Anna MarieZhang, ReneeAment, Seth ABehrens, M MargaritaBravo, Hector CorradaChun, JeroldDobin, AlexanderGillis, JesseHertzano, RonnaHof, Patrick RHöllt, ThomasHorwitz, Gregory DKeene, C DirkKharchenko, Peter VKo, Andrew LLelieveldt, Boudewijn PLuo, ChongyuanMukamel, Eran APinto-Duarte, AntónioPreissl, SebastianRegev, AvivRen, BingScheuermann, Richard HSmith, KimberlySpain, William JWhite, Owen RKoch, ChristofHawrylycz, MichaelTasic, BosiljkaMacosko, Evan ZMcCarroll, Steven ATing, Jonathan T
Source
Nature. 598(7879)
Subject
Human Genome
Neurosciences
Genetics
Biotechnology
Underpinning research
1.1 Normal biological development and functioning
Neurological
Animals
Atlases as Topic
Callithrix
Epigenesis
Genetic
Epigenomics
Female
GABAergic Neurons
Gene Expression Profiling
Glutamates
Humans
In Situ Hybridization
Fluorescence
Male
Mice
Middle Aged
Motor Cortex
Neurons
Organ Specificity
Phylogeny
Single-Cell Analysis
Species Specificity
Transcriptome
General Science & Technology
Language
Abstract
The primary motor cortex (M1) is essential for voluntary fine-motor control and is functionally conserved across mammals1. Here, using high-throughput transcriptomic and epigenomic profiling of more than 450,000 single nuclei in humans, marmoset monkeys and mice, we demonstrate a broadly conserved cellular makeup of this region, with similarities that mirror evolutionary distance and are consistent between the transcriptome and epigenome. The core conserved molecular identities of neuronal and non-neuronal cell types allow us to generate a cross-species consensus classification of cell types, and to infer conserved properties of cell types across species. Despite the overall conservation, however, many species-dependent specializations are apparent, including differences in cell-type proportions, gene expression, DNA methylation and chromatin state. Few cell-type marker genes are conserved across species, revealing a short list of candidate genes and regulatory mechanisms that are responsible for conserved features of homologous cell types, such as the GABAergic chandelier cells. This consensus transcriptomic classification allows us to use patch-seq (a combination of whole-cell patch-clamp recordings, RNA sequencing and morphological characterization) to identify corticospinal Betz cells from layer 5 in non-human primates and humans, and to characterize their highly specialized physiology and anatomy. These findings highlight the robust molecular underpinnings of cell-type diversity in M1 across mammals, and point to the genes and regulatory pathways responsible for the functional identity of cell types and their species-specific adaptations.