학술논문

High-throughput telomere length measurement at nucleotide resolution using the PacBio high fidelity sequencing platform
Document Type
article
Source
Nature Communications. 14(1)
Subject
Biological Sciences
Bioinformatics and Computational Biology
Genetics
Aging
Biotechnology
2.1 Biological and endogenous factors
Underpinning research
1.1 Normal biological development and functioning
Aetiology
Generic health relevance
Good Health and Well Being
Humans
Telomere
Shelterin Complex
Language
Abstract
Telomeres are specialized nucleoprotein structures at the ends of linear chromosomes. The progressive shortening of steady-state telomere length in normal human somatic cells is a promising biomarker for age-associated diseases. However, there remain substantial challenges in quantifying telomere length due to the lack of high-throughput method with nucleotide resolution for individual telomere. Here, we describe a workflow to capture telomeres using newly designed telobaits in human culture cell lines as well as clinical patient samples and measure their length accurately at nucleotide resolution using single-molecule real-time (SMRT) sequencing. Our results also reveal the extreme heterogeneity of telomeric variant sequences (TVSs) that are dispersed throughout the telomere repeat region. The presence of TVSs disrupts the continuity of the canonical (5'-TTAGGG-3')n telomere repeats, which affects the binding of shelterin complexes at the chromosomal ends and telomere protection. These findings may have profound implications in human aging and diseases.