학술논문

Reporting guidelines for human microbiome research: the STORMS checklist
Document Type
article
Author
Mirzayi, ChloeRenson, AudreyZohra, FatimaElsafoury, ShaimaaGeistlinger, LudwigKasselman, Lora JEckenrode, Kellyvan de Wijgert, JannekeLoughman, AmyMarques, Francine ZMacIntyre, David AArumugam, ManimozhiyanAzhar, RimshaBeghini, FrancescoBergstrom, KirkBhatt, AmiBisanz, Jordan EBraun, JonathanBravo, Hector CorradaBuck, Gregory ABushman, FredericCasero, DavidClarke, GerardCollado, Maria CarmenCotter, Paul DCryan, John FDemmer, Ryan TDevkota, SuzanneElinav, EranEscobar, Juan SFettweis, JenniferFinn, Robert DFodor, Anthony AForslund, SofiaFranke, AndreFurlanello, CesareGilbert, JackGrice, ElizabethHaibe-Kains, BenjaminHandley, ScottHerd, PamelaHolmes, SusanJacobs, Jonathan PKarstens, LisaKnight, RobKnights, DanKoren, OmryKwon, Douglas SLangille, MorganLindsay, BriannaMcGovern, DermotMcHardy, Alice CMcWeeney, ShannonMueller, Noel TNezi, LuigiOlm, MatthewPalm, NoahPasolli, EdoardoRaes, JeroenRedinbo, Matthew RRühlemann, MalteBalfour Sartor, RSchloss, Patrick DSchriml, LynnSegal, EranShardell, MichelleSharpton, ThomasSmirnova, EkaterinaSokol, HarrySonnenburg, Justin LSrinivasan, SujathaThingholm, Louise BTurnbaugh, Peter JUpadhyay, VaibhavWalls, Ramona LWilmes, PaulYamada, TakujiZeller, GeorgZhang, MingyuZhao, NiZhao, LipingBao, WenjunCulhane, AedinDevanarayan, ViswanathDopazo, JoaquinFan, XiaohuiFischer, MatthiasJones, WendellKusko, RebeccaMason, Christopher EMercer, Tim RSansone, Susanna-AssuntaScherer, AndreasShi, LemingThakkar, ShraddhaTong, WeidaWolfinger, RussHunter, ChristopherSegata, NicolaHuttenhower, Curtis
Source
Nature Medicine. 27(11)
Subject
Human Genome
Genetics
Computational Biology
Dysbiosis
Humans
Microbiota
Observational Studies as Topic
Research Design
Translational Science
Biomedical
Genomic Standards Consortium
Massive Analysis and Quality Control Society
Medical and Health Sciences
Immunology
Language
Abstract
The particularly interdisciplinary nature of human microbiome research makes the organization and reporting of results spanning epidemiology, biology, bioinformatics, translational medicine and statistics a challenge. Commonly used reporting guidelines for observational or genetic epidemiology studies lack key features specific to microbiome studies. Therefore, a multidisciplinary group of microbiome epidemiology researchers adapted guidelines for observational and genetic studies to culture-independent human microbiome studies, and also developed new reporting elements for laboratory, bioinformatics and statistical analyses tailored to microbiome studies. The resulting tool, called 'Strengthening The Organization and Reporting of Microbiome Studies' (STORMS), is composed of a 17-item checklist organized into six sections that correspond to the typical sections of a scientific publication, presented as an editable table for inclusion in supplementary materials. The STORMS checklist provides guidance for concise and complete reporting of microbiome studies that will facilitate manuscript preparation, peer review, and reader comprehension of publications and comparative analysis of published results.