학술논문

Human–chimpanzee fused cells reveal cis-regulatory divergence underlying skeletal evolution
Document Type
article
Source
Nature Genetics. 53(4)
Subject
Biochemistry and Cell Biology
Biological Sciences
Dental/Oral and Craniofacial Disease
Stem Cell Research
Genetics
Underpinning research
1.1 Normal biological development and functioning
Generic health relevance
Animals
Biological Evolution
Cell Differentiation
Chimera
Ellis-Van Creveld Syndrome
Female
Gene Expression
Genotype
Humans
Induced Pluripotent Stem Cells
Intercellular Signaling Peptides and Proteins
Male
Mice
Mice
Knockout
Neural Crest
Pan troglodytes
Phenotype
Signal Transduction
Skull
Species Specificity
Tetraploidy
Medical and Health Sciences
Developmental Biology
Agricultural biotechnology
Bioinformatics and computational biology
Language
Abstract
Gene regulatory divergence is thought to play a central role in determining human-specific traits. However, our ability to link divergent regulation to divergent phenotypes is limited. Here, we utilized human-chimpanzee hybrid induced pluripotent stem cells to study gene expression separating these species. The tetraploid hybrid cells allowed us to separate cis- from trans-regulatory effects, and to control for nongenetic confounding factors. We differentiated these cells into cranial neural crest cells, the primary cell type giving rise to the face. We discovered evidence of lineage-specific selection on the hedgehog signaling pathway, including a human-specific sixfold down-regulation of EVC2 (LIMBIN), a key hedgehog gene. Inducing a similar down-regulation of EVC2 substantially reduced hedgehog signaling output. Mice and humans lacking functional EVC2 show striking phenotypic parallels to human-chimpanzee craniofacial differences, suggesting that the regulatory divergence of hedgehog signaling may have contributed to the unique craniofacial morphology of humans.