학술논문

The context-specific role of germline pathogenicity in tumorigenesis
Document Type
article
Source
Nature Genetics. 53(11)
Subject
Biological Sciences
Genetics
Human Genome
Rare Diseases
Cancer
Clinical Research
2.1 Biological and endogenous factors
Aetiology
Carcinogenesis
DNA Copy Number Variations
DNA Mismatch Repair
Genetic Predisposition to Disease
Germ-Line Mutation
Heterozygote
Humans
Neoplasms
Phenotype
Medical and Health Sciences
Developmental Biology
Agricultural biotechnology
Bioinformatics and computational biology
Language
Abstract
Human cancers arise from environmental, heritable and somatic factors, but how these mechanisms interact in tumorigenesis is poorly understood. Studying 17,152 prospectively sequenced patients with cancer, we identified pathogenic germline variants in cancer predisposition genes, and assessed their zygosity and co-occurring somatic alterations in the concomitant tumors. Two major routes to tumorigenesis were apparent. In carriers of pathogenic germline variants in high-penetrance genes (5.1% overall), lineage-dependent patterns of biallelic inactivation led to tumors exhibiting mechanism-specific somatic phenotypes and fewer additional somatic oncogenic drivers. Nevertheless, 27% of cancers in these patients, and most tumors in patients with pathogenic germline variants in lower-penetrance genes, lacked particular hallmarks of tumorigenesis associated with the germline allele. The dependence of tumors on pathogenic germline variants is variable and often dictated by both penetrance and lineage, a finding with implications for clinical management.