학술논문

Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci
Document Type
article
Source
Nature Genetics. 48(5)
Subject
Biological Sciences
Genetics
Prevention
2.1 Biological and endogenous factors
Aetiology
Inflammatory and immune system
Bayes Theorem
Cholangitis
Sclerosing
Chronic Disease
Colitis
Ulcerative
Comorbidity
Crohn Disease
Genetic Heterogeneity
Genetic Pleiotropy
Genetic Variation
Genome-Wide Association Study
Genotype
Humans
Inflammation
Psoriasis
Quantitative Trait Loci
Spondylitis
Ankylosing
International IBD Genetics Consortium
International Genetics of Ankylosing Spondylitis Consortium
International PSC Study Group
Genetic Analysis of Psoriasis Consortium
Psoriasis Association Genetics Extension
Medical and Health Sciences
Developmental Biology
Agricultural biotechnology
Bioinformatics and computational biology
Language
Abstract
We simultaneously investigated the genetic landscape of ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis and ulcerative colitis to investigate pleiotropy and the relationship between these clinically related diseases. Using high-density genotype data from more than 86,000 individuals of European ancestry, we identified 244 independent multidisease signals, including 27 new genome-wide significant susceptibility loci and 3 unreported shared risk loci. Complex pleiotropy was supported when contrasting multidisease signals with expression data sets from human, rat and mouse together with epigenetic and expressed enhancer profiles. The comorbidities among the five immune diseases were best explained by biological pleiotropy rather than heterogeneity (a subgroup of cases genetically identical to those with another disease, possibly owing to diagnostic misclassification, molecular subtypes or excessive comorbidity). In particular, the strong comorbidity between primary sclerosing cholangitis and inflammatory bowel disease is likely the result of a unique disease, which is genetically distinct from classical inflammatory bowel disease phenotypes.