학술논문

The Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis.
Document Type
article
Source
Cell. 172(1-2)
Subject
Cerebral Cortex
Neurons
Cells
Cultured
Cell Line
Chromatin
Humans
T-Box Domain Proteins
Chromatin Assembly and Disassembly
Gene Expression Regulation
Developmental
Polymorphism
Genetic
Female
Male
Receptor
Fibroblast Growth Factor
Type 2
Enhancer Elements
Genetic
Neurogenesis
ATAC-seq
chromatin
enhancers
evolution
human neocortical development
transcription factors
Cells
Cultured
Gene Expression Regulation
Developmental
Polymorphism
Genetic
Receptor
Fibroblast Growth Factor
Type 2
Enhancer Elements
Biological Sciences
Medical and Health Sciences
Developmental Biology
Language
Abstract
Non-coding regions comprise most of the human genome and harbor a significant fraction of risk alleles for neuropsychiatric diseases, yet their functions remain poorly defined. We created a high-resolution map of non-coding elements involved in human cortical neurogenesis by contrasting chromatin accessibility and gene expression in the germinal zone and cortical plate of the developing cerebral cortex. We link distal regulatory elements (DREs) to their cognate gene(s) together with chromatin interaction data and show that target genes of human-gained enhancers (HGEs) regulate cortical neurogenesis and are enriched in outer radial glia, a cell type linked to human cortical evolution. We experimentally validate the regulatory effects of predicted enhancers for FGFR2 and EOMES. We observe that common genetic variants associated with educational attainment, risk for neuropsychiatric disease, and intracranial volume are enriched within regulatory elements involved in cortical neurogenesis, demonstrating the importance of this early developmental process for adult human cognitive function.