학술논문

A Scan for Human-Specific Relaxation of Negative Selection Reveals Unexpected Polymorphism in Proteasome Genes
Document Type
article
Source
Molecular Biology and Evolution. 30(8)
Subject
Biological Sciences
Genetics
Biotechnology
Human Genome
Underpinning research
1.1 Normal biological development and functioning
Generic health relevance
Animals
Evolution
Molecular
Gene Frequency
Genome
Human
Humans
Pan troglodytes
Polymorphism
Genetic
Polymorphism
Single Nucleotide
Proteasome Endopeptidase Complex
Selection
Genetic
relaxation of constraints
human evolution
negative selection
olfactory transduction
proteasome
Biochemistry and Cell Biology
Evolutionary Biology
Biochemistry and cell biology
Evolutionary biology
Language
Abstract
Environmental or genomic changes during evolution can relax negative selection pressure on specific loci, permitting high frequency polymorphisms at previously conserved sites. Here, we jointly analyze population genomic and comparative genomic data to search for functional processes showing relaxed negative selection specifically in the human lineage, whereas remaining evolutionarily conserved in other mammals. Consistent with previous studies, we find that olfactory receptor genes display such a signature of relaxation in humans. Intriguingly, proteasome genes also show a prominent signal of human-specific relaxation: multiple proteasome subunits, including four members of the catalytic core particle, contain high frequency nonsynonymous polymorphisms at sites conserved across mammals. Chimpanzee proteasome genes do not display a similar trend. Human proteasome genes also bear no evidence of recent positive or balancing selection. These results suggest human-specific relaxation of negative selection in proteasome subunits; the exact biological causes, however, remain unknown.