학술논문

De Novo Mutations in SLC1A2 and CACNA1A Are Important Causes of Epileptic Encephalopathies
Document Type
article
Source
American Journal of Human Genetics. 99(2)
Subject
Human Genome
Brain Disorders
Pediatric
Prevention
Genetics
Aetiology
2.1 Biological and endogenous factors
Adolescent
Adult
Alleles
Calcium Channels
Child
Preschool
Cohort Studies
Epilepsy
Excitatory Amino Acid Transporter 2
Female
GTP-Binding Protein alpha Subunits
Gi-Go
Glutamate Plasma Membrane Transport Proteins
Guanine Nucleotide Exchange Factors
Humans
Infant
Infant
Newborn
Male
Mosaicism
Mutation
N-Acetylglucosaminyltransferases
Receptors
GABA-A
Seizures
Epi4K Consortium
Biological Sciences
Medical and Health Sciences
Genetics & Heredity
Language
Abstract
Epileptic encephalopathies (EEs) are the most clinically important group of severe early-onset epilepsies. Next-generation sequencing has highlighted the crucial contribution of de novo mutations to the genetic architecture of EEs as well as to their underlying genetic heterogeneity. Our previous whole-exome sequencing study of 264 parent-child trios revealed more than 290 candidate genes in which only a single individual had a de novo variant. We sought to identify additional pathogenic variants in a subset (n = 27) of these genes via targeted sequencing in an unsolved cohort of 531 individuals with a diverse range of EEs. We report 17 individuals with pathogenic variants in seven of the 27 genes, defining a genetic etiology in 3.2% of this unsolved cohort. Our results provide definitive evidence that de novo mutations in SLC1A2 and CACNA1A cause specific EEs and expand the compendium of clinically relevant genotypes for GABRB3. We also identified EEs caused by genetic variants in ALG13, DNM1, and GNAO1 and report a mutation in IQSEC2. Notably, recurrent mutations accounted for 7/17 of the pathogenic variants identified. As a result of high-depth coverage, parental mosaicism was identified in two out of 14 cases tested with mutant allelic fractions of 5%-6% in the unaffected parents, carrying significant reproductive counseling implications. These results confirm that dysregulation in diverse cellular neuronal pathways causes EEs, and they will inform the diagnosis and management of individuals with these devastating disorders.