학술논문

Gene content evolution in the arthropods
Document Type
article
Author
Thomas, Gregg WCDohmen, EliasHughes, Daniel STMurali, Shwetha CPoelchau, MonicaGlastad, KarlAnstead, Clare AAyoub, Nadia ABatterham, PhillipBellair, MichelleBinford, Greta JChao, HsuChen, Yolanda HChilders, ChristopherDinh, HuyenDoddapaneni, Harsha VardhanDuan, Jian JDugan, ShannonEsposito, Lauren AFriedrich, MarkusGarb, JessicaGasser, Robin BGoodisman, Michael ADGundersen-Rindal, Dawn EHan, YiHandler, Alfred MHatakeyama, MasatsuguHering, LarsHunter, Wayne BIoannidis, PanagiotisJayaseelan, Joy CKalra, DivyaKhila, AbderrahmanKorhonen, Pasi KLee, Carol EunmiLee, Sandra LLi, YiyuanLindsey, Amelia RIMayer, GeorgMcGregor, Alistair PMcKenna, Duane DMisof, BernhardMunidasa, MalaMunoz-Torres, MonicaMuzny, Donna MNiehuis, OliverOsuji-Lacy, NkechinyerePalli, Subba RPanfilio, Kristen APechmann, MatthiasPerry, TrentPeters, Ralph SPoynton, Helen CPrpic, Nikola-MichaelQu, JiaxinRotenberg, DorithSchal, CobySchoville, Sean DScully, Erin DSkinner, EvetteSloan, Daniel BStouthamer, RichardStrand, Michael RSzucsich, Nikolaus UWijeratne, AselaYoung, Neil DZattara, Eduardo EBenoit, Joshua BZdobnov, Evgeny MPfrender, Michael EHackett, Kevin JWerren, John HWorley, Kim CGibbs, Richard AChipman, Ariel DWaterhouse, Robert MBornberg-Bauer, ErichHahn, Matthew WRichards, Stephen
Source
Genome Biology. 21(1)
Subject
Human Genome
Genetics
Biotechnology
Generic health relevance
Animals
Arthropods
DNA Methylation
Evolution
Molecular
Genetic Speciation
Genetic Variation
Phylogeny
Genome assembly
Genomics
Protein domains
Gene content
Evolution
DNA methylation
Environmental Sciences
Biological Sciences
Information and Computing Sciences
Bioinformatics
Language
Abstract
BackgroundArthropods comprise the largest and most diverse phylum on Earth and play vital roles in nearly every ecosystem. Their diversity stems in part from variations on a conserved body plan, resulting from and recorded in adaptive changes in the genome. Dissection of the genomic record of sequence change enables broad questions regarding genome evolution to be addressed, even across hyper-diverse taxa within arthropods.ResultsUsing 76 whole genome sequences representing 21 orders spanning more than 500 million years of arthropod evolution, we document changes in gene and protein domain content and provide temporal and phylogenetic context for interpreting these innovations. We identify many novel gene families that arose early in the evolution of arthropods and during the diversification of insects into modern orders. We reveal unexpected variation in patterns of DNA methylation across arthropods and examples of gene family and protein domain evolution coincident with the appearance of notable phenotypic and physiological adaptations such as flight, metamorphosis, sociality, and chemoperception.ConclusionsThese analyses demonstrate how large-scale comparative genomics can provide broad new insights into the genotype to phenotype map and generate testable hypotheses about the evolution of animal diversity.