학술논문

Large-Scale Exome-wide Association Analysis Identifies Loci for White Blood Cell Traits and Pleiotropy with Immune-Mediated Diseases
Document Type
article
Author
Tajuddin, Salman MSchick, Ursula MEicher, John DChami, NathalieGiri, AyushBrody, Jennifer AHill, W DavidKacprowski, TimLi, JinLyytikäinen, Leo-PekkaManichaikul, AniMihailov, EvelinO’Donoghue, Michelle LPankratz, NathanPazoki, RahaPolfus, Linda MSmith, Albert VernonSchurmann, ClaudiaVacchi-Suzzi, CaterinaWaterworth, Dawn MEvangelou, EvangelosYanek, Lisa RBurt, AmberChen, Ming-Hueivan Rooij, Frank JAFloyd, James SGreinacher, AndreasHarris, Tamara BHighland, Heather MLange, Leslie ALiu, YongmeiMägi, ReedikNalls, Mike AMathias, Rasika ANickerson, Deborah ANikus, KjellStarr, John MTardif, Jean-ClaudeTzoulaki, IoannaEdwards, Digna R VelezWallentin, LarsBartz, Traci MBecker, Lewis CDenny, Joshua CRaffield, Laura MRioux, John DFriedrich, NeleFornage, MyriamGao, HeHirschhorn, Joel NLiewald, David CMRich, Stephen SUitterlinden, AndreBastarache, LisaBecker, Diane MBoerwinkle, Ericde Denus, SimonBottinger, Erwin PHayward, CarolineHofman, AlbertHomuth, GeorgLange, EthanLauner, Lenore JLehtimäki, TerhoLu, YingchangMetspalu, AndresO’Donnell, Chris JQuarells, Rakale CRichard, MelissaTorstenson, Eric STaylor, Kent DVergnaud, Anne-ClaireZonderman, Alan BCrosslin, David RDeary, Ian JDörr, MarcusElliott, PaulEvans, Michele KGudnason, VilmundurKähönen, MikaPsaty, Bruce MRotter, Jerome ISlater, Andrew JDehghan, AbbasWhite, Harvey DGanesh, Santhi KLoos, Ruth JFEsko, TõnuFaraday, NauderWilson, James GCushman, MaryJohnson, Andrew DEdwards, Todd LZakai, Neil ALettre, GuillaumeReiner, Alex PAuer, Paul L
Source
American Journal of Human Genetics. 99(1)
Subject
Biological Sciences
Biomedical and Clinical Sciences
Genetics
Immunology
Stem Cell Research
Human Genome
Stem Cell Research - Nonembryonic - Non-Human
Autoimmune Disease
Hematology
2.1 Biological and endogenous factors
1.1 Normal biological development and functioning
Underpinning research
Aetiology
Inflammatory and immune system
Blood Cell Count
Exome
Genetic Loci
Genetic Pleiotropy
Genome-Wide Association Study
Humans
Immune System Diseases
Leukocytes
Quality Control
Medical and Health Sciences
Genetics & Heredity
Biological sciences
Biomedical and clinical sciences
Health sciences
Language
Abstract
White blood cells play diverse roles in innate and adaptive immunity. Genetic association analyses of phenotypic variation in circulating white blood cell (WBC) counts from large samples of otherwise healthy individuals can provide insights into genes and biologic pathways involved in production, differentiation, or clearance of particular WBC lineages (myeloid, lymphoid) and also potentially inform the genetic basis of autoimmune, allergic, and blood diseases. We performed an exome array-based meta-analysis of total WBC and subtype counts (neutrophils, monocytes, lymphocytes, basophils, and eosinophils) in a multi-ancestry discovery and replication sample of ∼157,622 individuals from 25 studies. We identified 16 common variants (8 of which were coding variants) associated with one or more WBC traits, the majority of which are pleiotropically associated with autoimmune diseases. Based on functional annotation, these loci included genes encoding surface markers of myeloid, lymphoid, or hematopoietic stem cell differentiation (CD69, CD33, CD87), transcription factors regulating lineage specification during hematopoiesis (ASXL1, IRF8, IKZF1, JMJD1C, ETS2-PSMG1), and molecules involved in neutrophil clearance/apoptosis (C10orf54, LTA), adhesion (TNXB), or centrosome and microtubule structure/function (KIF9, TUBD1). Together with recent reports of somatic ASXL1 mutations among individuals with idiopathic cytopenias or clonal hematopoiesis of undetermined significance, the identification of a common regulatory 3' UTR variant of ASXL1 suggests that both germline and somatic ASXL1 mutations contribute to lower blood counts in otherwise asymptomatic individuals. These association results shed light on genetic mechanisms that regulate circulating WBC counts and suggest a prominent shared genetic architecture with inflammatory and autoimmune diseases.