학술논문

Proteome-wide systems genetics identifies UFMylation as a regulator of skeletal muscle function
Document Type
article
Source
Subject
Biochemistry and Cell Biology
Biomedical and Clinical Sciences
Biological Sciences
Genetics
Medical Physiology
Human Genome
Rare Diseases
Biotechnology
2.1 Biological and endogenous factors
Aetiology
Underpinning research
1.1 Normal biological development and functioning
Musculoskeletal
Mice
Animals
Humans
Proteome
Proteomics
Quality of Life
Muscle
Skeletal
Phenotype
skeletal muscle
systems genetics
proteomics
UFMylation
Human
Mouse
computational biology
human
mouse
systems biology
Biological sciences
Biomedical and clinical sciences
Health sciences
Language
Abstract
Improving muscle function has great potential to improve the quality of life. To identify novel regulators of skeletal muscle metabolism and function, we performed a proteomic analysis of gastrocnemius muscle from 73 genetically distinct inbred mouse strains, and integrated the data with previously acquired genomics and >300 molecular/phenotypic traits via quantitative trait loci mapping and correlation network analysis. These data identified thousands of associations between protein abundance and phenotypes and can be accessed online (https://muscle.coffeeprot.com/) to identify regulators of muscle function. We used this resource to prioritize targets for a functional genomic screen in human bioengineered skeletal muscle. This identified several negative regulators of muscle function including UFC1, an E2 ligase for protein UFMylation. We show UFMylation is up-regulated in a mouse model of amyotrophic lateral sclerosis, a disease that involves muscle atrophy. Furthermore, in vivo knockdown of UFMylation increased contraction force, implicating its role as a negative regulator of skeletal muscle function.