학술논문
JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Document Type
article
Author
Rodriguez, Nicolas; Thomas, Alex; Watanabe, Leandro; Vazirabad, Ibrahim Y; Kofia, Victor; Gómez, Harold F; Mittag, Florian; Matthes, Jakob; Rudolph, Jan; Wrzodek, Finja; Netz, Eugen; Diamantikos, Alexander; Eichner, Johannes; Keller, Roland; Wrzodek, Clemens; Fröhlich, Sebastian; Lewis, Nathan E; Myers, Chris J; Le Novère, Nicolas; Palsson, Bernhard Ø; Hucka, Michael; Dräger, Andreas
Source
Bioinformatics (Oxford, England). 31(20)
Subject
Language
Abstract
UnlabelledJSBML, the official pure Java programming library for the Systems Biology Markup Language (SBML) format, has evolved with the advent of different modeling formalisms in systems biology and their ability to be exchanged and represented via extensions of SBML. JSBML has matured into a major, active open-source project with contributions from a growing, international team of developers who not only maintain compatibility with SBML, but also drive steady improvements to the Java interface and promote ease-of-use with end users.Availability and implementationSource code, binaries and documentation for JSBML can be freely obtained under the terms of the LGPL 2.1 from the website http://sbml.org/Software/JSBML. More information about JSBML can be found in the user guide at http://sbml.org/Software/JSBML/docs/.Contactjsbml-development@googlegroups.com or andraeger@eng.ucsd.eduSupplementary informationSupplementary data are available at Bioinformatics online.