학술논문

Genome-wide analyses characterize shared heritability among cancers and identify novel cancer susceptibility regions
Document Type
article
Author
Lindström, SaraWang, LuFeng, HelianMajumdar, ArunabhaHuo, SijiaMacdonald, JamesHarrison, TabithaTurman, ConstanceChen, HongjieMancuso, NicholasBammler, TheoConsortium, Breast Cancer AssociationGallinger, SteveGruber, Stephen BGunter, Marc JLe Marchand, LoicMoreno, VictorOffit, KennethStudy, Genetics And Epidemiology Of Colorectal Cancer Consortium Colorectal Transdisciplinary Study Colon Cancer Family RegistryDe Vivo, ImmaculataO’Mara, Tracy ASpurdle, Amanda BTomlinson, IanConsortium, Endometrial Cancer AssociationFitzgerald, RebeccaGharahkhani, PuyaGockel, InesJankowski, JanuszMacgregor, StuartSchumacher, JohannesBarnholtz-Sloan, JillBondy, Melissa LHoulston, Richard SJenkins, Robert BMelin, BeatriceWrensch, MargaretBrennan, PaulChristiani, David CJohansson, MattiasMckay, JamesAldrich, Melinda CAmos, Christopher ILandi, Maria TeresaTardon, AdoninaConsortium, International Lung CancerBishop, D TimothyDemenais, FlorenceGoldstein, Alisa MIles, Mark MKanetsky, Peter ALaw, Matthew HConsortium, Ovarian Cancer AssociationAmundadottir, Laufey TStolzenberg-Solomon, RachaelWolpin, Brian MConsortium, Pancreatic Cancer CohortKlein, AlisonPetersen, GloriaRisch, HarveyConsortium, The PRACTICAL Consortium Pancreatic Cancer Case-ControlChanock, Stephen JPurdue, Mark PScelo, GhislainePharoah, PaulKar, SiddharthaHung, Rayjean JPasaniuc, BogdanKraft, Peter
Source
Journal of the National Cancer Institute. 115(6)
Subject
Biomedical and Clinical Sciences
Oncology and Carcinogenesis
Human Genome
Genetics
Digestive Diseases
Prevention
Clinical Research
Urologic Diseases
Cancer
Rare Diseases
Aetiology
2.1 Biological and endogenous factors
Male
Humans
Genome-Wide Association Study
Genetic Predisposition to Disease
Neoplasms
Risk Factors
Transcriptome
Polymorphism
Single Nucleotide
Breast Cancer Association Consortium
Colorectal Transdisciplinary Study (CORECT)
Colon Cancer Family Registry Study (CCFR)
Genetics And Epidemiology Of Colorectal Cancer Consortium
Endometrial Cancer Association Consortium
International Lung Cancer Consortium
Ovarian Cancer Association Consortium
Pancreatic Cancer Cohort Consortium
Pancreatic Cancer Case-Control Consortium (Panc4)
The PRACTICAL Consortium
Oncology & Carcinogenesis
Oncology and carcinogenesis
Language
Abstract
BackgroundThe shared inherited genetic contribution to risk of different cancers is not fully known. In this study, we leverage results from 12 cancer genome-wide association studies (GWAS) to quantify pairwise genome-wide genetic correlations across cancers and identify novel cancer susceptibility loci.MethodsWe collected GWAS summary statistics for 12 solid cancers based on 376 759 participants with cancer and 532 864 participants without cancer of European ancestry. The included cancer types were breast, colorectal, endometrial, esophageal, glioma, head and neck, lung, melanoma, ovarian, pancreatic, prostate, and renal cancers. We conducted cross-cancer GWAS and transcriptome-wide association studies to discover novel cancer susceptibility loci. Finally, we assessed the extent of variant-specific pleiotropy among cancers at known and newly identified cancer susceptibility loci.ResultsWe observed widespread but modest genome-wide genetic correlations across cancers. In cross-cancer GWAS and transcriptome-wide association studies, we identified 15 novel cancer susceptibility loci. Additionally, we identified multiple variants at 77 distinct loci with strong evidence of being associated with at least 2 cancer types by testing for pleiotropy at known cancer susceptibility loci.ConclusionsOverall, these results suggest that some genetic risk variants are shared among cancers, though much of cancer heritability is cancer-specific and thus tissue-specific. The increase in statistical power associated with larger sample sizes in cross-disease analysis allows for the identification of novel susceptibility regions. Future studies incorporating data on multiple cancer types are likely to identify additional regions associated with the risk of multiple cancer types.