학술논문

Identification of AMPK Phosphorylation Sites Reveals a Network of Proteins Involved in Cell Invasion and Facilitates Large-Scale Substrate Prediction
Document Type
article
Source
Cell Metabolism. 22(5)
Subject
Biochemistry and Cell Biology
Biological Sciences
2.1 Biological and endogenous factors
1.1 Normal biological development and functioning
Underpinning research
Aetiology
Generic health relevance
AMP-Activated Protein Kinases
Animals
Cell Adhesion
Cell Movement
Extracellular Matrix
Humans
Oncogene Proteins
Peptides
Phosphorylation
Protein Interaction Maps
Single-Cell Analysis
Substrate Specificity
Medical Biochemistry and Metabolomics
Endocrinology & Metabolism
Biochemistry and cell biology
Medical biochemistry and metabolomics
Language
Abstract
AMP-activated protein kinase (AMPK) is a central energy gauge that regulates metabolism and has been increasingly involved in non-metabolic processes and diseases. However, AMPK's direct substrates in non-metabolic contexts are largely unknown. To better understand the AMPK network, we use a chemical genetics screen coupled to a peptide capture approach in whole cells, resulting in identification of direct AMPK phosphorylation sites. Interestingly, the high-confidence AMPK substrates contain many proteins involved in cell motility, adhesion, and invasion. AMPK phosphorylation of the RHOA guanine nucleotide exchange factor NET1A inhibits extracellular matrix degradation, an early step in cell invasion. The identification of direct AMPK phosphorylation sites also facilitates large-scale prediction of AMPK substrates. We provide an AMPK motif matrix and a pipeline to predict additional AMPK substrates from quantitative phosphoproteomics datasets. As AMPK is emerging as a critical node in aging and pathological processes, our study identifies potential targets for therapeutic strategies.