학술논문

Exposing Structural Variations in SARS-CoV-2 Evolution
Document Type
article
Source
Res Sq. 2(09-20)
Subject
Biological Sciences
Bioinformatics and Computational Biology
Emerging Infectious Diseases
Pneumonia & Influenza
Prevention
Infectious Diseases
Lung
Immunization
Pneumonia
Vaccine Related
Biodefense
Aetiology
2.1 Biological and endogenous factors
Generic health relevance
Good Health and Well Being
Language
Abstract
The mutation of SARS-CoV-2 influences viral function as residue replacements affect both physiochemical properties and folding conformations. Although a large amount of data on SARS-CoV-2 is available, the investigation of how viral functions change in response to mutations is hampered by a lack of effective structural analysis. Here, we exploit advances in protein structure fingerprint technology to study the folding conformational changes induced by mutations. With the integration of both protein sequences and folding conformations and alignments of SARS-CoV to SARS-CoV-2, the UK variant and India variant, we found that structural variations in the spike protein at the binding interface interacting with ACE2 play a critical role in coronavirus entry into human cells. Additionally, the structural variations impact vaccine effectiveness and drug function over the course of SARS-CoV-2 evolution. The analysis of structural variations revealed how the coronavirus has gradually evolved in both structure and function and how the SARS-CoV-2 variants have contributed to more severe acute disease worldwide.