학술논문

Genome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism
Document Type
article
Source
Nature. 540(7633)
Subject
Pediatric
Biotechnology
Mental Health
Brain Disorders
Genetics
Human Genome
Neurosciences
Intellectual and Developmental Disabilities (IDD)
Autism
2.1 Biological and endogenous factors
1.1 Normal biological development and functioning
Aetiology
Underpinning research
Neurological
Mental health
Alternative Splicing
Animals
Autism Spectrum Disorder
Autopsy
Case-Control Studies
Chromosome Aberrations
Chromosomes
Human
Pair 15
Exons
Frontal Lobe
Gene Expression Profiling
Gene Expression Regulation
Genome
Human
Humans
Intellectual Disability
Neurons
Primates
RNA
Long Noncoding
SOXD Transcription Factors
Species Specificity
Temporal Lobe
Transcriptome
General Science & Technology
Language
Abstract
Autism spectrum disorder (ASD) involves substantial genetic contributions. These contributions are profoundly heterogeneous but may converge on common pathways that are not yet well understood. Here, through post-mortem genome-wide transcriptome analysis of the largest cohort of samples analysed so far, to our knowledge, we interrogate the noncoding transcriptome, alternative splicing, and upstream molecular regulators to broaden our understanding of molecular convergence in ASD. Our analysis reveals ASD-associated dysregulation of primate-specific long noncoding RNAs (lncRNAs), downregulation of the alternative splicing of activity-dependent neuron-specific exons, and attenuation of normal differences in gene expression between the frontal and temporal lobes. Our data suggest that SOX5, a transcription factor involved in neuron fate specification, contributes to this reduction in regional differences. We further demonstrate that a genetically defined subtype of ASD, chromosome 15q11.2-13.1 duplication syndrome (dup15q), shares the core transcriptomic signature observed in idiopathic ASD. Co-expression network analysis reveals that individuals with ASD show age-related changes in the trajectory of microglial and synaptic function over the first two decades, and suggests that genetic risk for ASD may influence changes in regional cortical gene expression. Our findings illustrate how diverse genetic perturbations can lead to phenotypic convergence at multiple biological levels in a complex neuropsychiatric disorder.