학술논문

Challenges in Quantifying Cytosine Methylation in the HIV Provirus
Document Type
article
Source
mBio. 10(1)
Subject
Biological Sciences
Biomedical and Clinical Sciences
Genetics
Immunology
Medical Microbiology
HIV/AIDS
Infectious Diseases
Human Genome
Sexually Transmitted Infections
Infection
Cytosine
DNA Methylation
DNA
Viral
Epigenesis
Genetic
Gene Expression Regulation
Viral
HIV
Proviruses
Virus Latency
HIV latency
cytosine methylation
epigenetic silencing
non-CpG methylation
Microbiology
Biochemistry and cell biology
Medical microbiology
Language
Abstract
DNA methylation is an epigenetic mechanism most commonly associated with transcriptional repression. While it is clear that DNA methylation can silence HIV proviral expression in in vitro latency models, its correlation with HIV persistence and expression in vivo is ambiguous, particularly in persons living with HIV (PLWH) receiving antiretroviral therapy (ART). Several factors potentially contribute to discrepancies between results in the literature, including differences in integration sites, functional proviral load, sampling bias, and stochastic PCR amplification. Recent studies into genomic features of cytosine methylation sites in mammalian genes offer potentially significant insights into this mechanism. Here, we discuss the importance of these factors in the context of the HIV.