학술논문

The whole-genome landscape of medulloblastoma subtypes
Document Type
article
Author
Northcott, Paul ABuchhalter, IvoMorrissy, A SoranaHovestadt, VolkerWeischenfeldt, JoachimEhrenberger, TobiasGröbner, SusanneSegura-Wang, MaiaZichner, ThomasRudneva, Vasilisa AWarnatz, Hans-JörgSidiropoulos, NikosPhillips, Aaron HSchumacher, StevenKleinheinz, KortineWaszak, Sebastian MErkek, SerapJones, David TWWorst, Barbara CKool, MarcelZapatka, MarcJäger, NatalieChavez, LukasHutter, BarbaraBieg, MatthiasParamasivam, NagarajanHeinold, MichaelGu, ZuguangIshaque, NaveedJäger-Schmidt, ChristinaImbusch, Charles DJugold, AlkeHübschmann, DanielRisch, ThomasAmstislavskiy, VyacheslavGonzalez, Francisco German RodriguezWeber, Ursula DWolf, StephanRobinson, Giles WZhou, XinWu, GangFinkelstein, DavidLiu, YanlingCavalli, Florence MGLuu, BettyRamaswamy, VijayWu, XiaochongKoster, JanRyzhova, MarinaCho, Yoon-JaePomeroy, Scott LHerold-Mende, ChristelSchuhmann, MartinEbinger, MartinLiau, Linda MMora, JaumeMcLendon, Roger EJabado, NadaKumabe, ToshihiroChuah, EricMa, YussanneMoore, Richard AMungall, Andrew JMungall, Karen LThiessen, NinaTse, KaneWong, TinaJones, Steven JMWitt, OlafMilde, TillVon Deimling, AndreasCapper, DavidKorshunov, AndreyYaspo, Marie-LaureKriwacki, RichardGajjar, AmarZhang, JinghuiBeroukhim, RameenFraenkel, ErnestKorbel, Jan OBrors, BenediktSchlesner, MatthiasEils, RolandMarra, Marco APfister, Stefan MTaylor, Michael DLichter, Peter
Source
Nature. 547(7663)
Subject
Cancer
Human Genome
Brain Disorders
Pediatric Cancer
Brain Cancer
Genetics
Biotechnology
Rare Diseases
Neurosciences
Pediatric
Aetiology
2.1 Biological and endogenous factors
Development of treatments and therapeutic interventions
5.1 Pharmaceuticals
Good Health and Well Being
Carcinogenesis
Carrier Proteins
Cohort Studies
DNA Methylation
DNA Mutational Analysis
Datasets as Topic
Epistasis
Genetic
Genome
Human
Genomics
Humans
Medulloblastoma
Molecular Targeted Therapy
Muscle Proteins
Mutation
Oncogenes
Transcription Factors
Whole Genome Sequencing
Wnt Proteins
General Science & Technology
Language
Abstract
Current therapies for medulloblastoma, a highly malignant childhood brain tumour, impose debilitating effects on the developing child, and highlight the need for molecularly targeted treatments with reduced toxicity. Previous studies have been unable to identify the full spectrum of driver genes and molecular processes that operate in medulloblastoma subgroups. Here we analyse the somatic landscape across 491 sequenced medulloblastoma samples and the molecular heterogeneity among 1,256 epigenetically analysed cases, and identify subgroup-specific driver alterations that include previously undiscovered actionable targets. Driver mutations were confidently assigned to most patients belonging to Group 3 and Group 4 medulloblastoma subgroups, greatly enhancing previous knowledge. New molecular subtypes were differentially enriched for specific driver events, including hotspot in-frame insertions that target KBTBD4 and 'enhancer hijacking' events that activate PRDM6. Thus, the application of integrative genomics to an extensive cohort of clinical samples derived from a single childhood cancer entity revealed a series of cancer genes and biologically relevant subtype diversity that represent attractive therapeutic targets for the treatment of patients with medulloblastoma.