학술논문

Pathologic gene network rewiring implicates PPP1R3A as a central regulator in pressure overload heart failure
Document Type
article
Source
Nature Communications. 10(1)
Subject
Biological Sciences
Genetics
Human Genome
Biotechnology
Heart Disease
Cardiovascular
2.1 Biological and endogenous factors
Aetiology
Good Health and Well Being
Animals
Benzeneacetamides
Cells
Cultured
Datasets as Topic
Disease Models
Animal
Female
Gene Expression Profiling
Gene Expression Regulation
Gene Knockdown Techniques
Gene Regulatory Networks
Genome-Wide Association Study
Heart Failure
Humans
Male
Metabolic Networks and Pathways
Mice
Mice
Knockout
Middle Aged
Myocytes
Cardiac
Phosphoprotein Phosphatases
Primary Cell Culture
Pyridines
Quantitative Trait Loci
Rats
Rats
Sprague-Dawley
Sequence Analysis
RNA
Language
Abstract
Heart failure is a leading cause of mortality, yet our understanding of the genetic interactions underlying this disease remains incomplete. Here, we harvest 1352 healthy and failing human hearts directly from transplant center operating rooms, and obtain genome-wide genotyping and gene expression measurements for a subset of 313. We build failing and non-failing cardiac regulatory gene networks, revealing important regulators and cardiac expression quantitative trait loci (eQTLs). PPP1R3A emerges as a regulator whose network connectivity changes significantly between health and disease. RNA sequencing after PPP1R3A knockdown validates network-based predictions, and highlights metabolic pathway regulation associated with increased cardiomyocyte size and perturbed respiratory metabolism. Mice lacking PPP1R3A are protected against pressure-overload heart failure. We present a global gene interaction map of the human heart failure transition, identify previously unreported cardiac eQTLs, and demonstrate the discovery potential of disease-specific networks through the description of PPP1R3A as a central regulator in heart failure.