학술논문

Sparse deep neural networks on imaging genetics for schizophrenia case–control classification
Document Type
article
Source
Human Brain Mapping. 42(8)
Subject
Brain Disorders
Schizophrenia
Neurosciences
Genetics
Serious Mental Illness
Mental Health
Adult
Case-Control Studies
Cerebral Cortex
Deep Learning
Gray Matter
Humans
Magnetic Resonance Imaging
Neuroimaging
Polymorphism
Single Nucleotide
Support Vector Machine
deep neural network
gray matter volume
schizophrenia
single nucleotide polymorphism
sparse
Cognitive Sciences
Experimental Psychology
Language
Abstract
Deep learning methods hold strong promise for identifying biomarkers for clinical application. However, current approaches for psychiatric classification or prediction do not allow direct interpretation of original features. In the present study, we introduce a sparse deep neural network (DNN) approach to identify sparse and interpretable features for schizophrenia (SZ) case-control classification. An L0 -norm regularization is implemented on the input layer of the network for sparse feature selection, which can later be interpreted based on importance weights. We applied the proposed approach on a large multi-study cohort with gray matter volume (GMV) and single nucleotide polymorphism (SNP) data for SZ classification. A total of 634 individuals served as training samples, and the classification model was evaluated for generalizability on three independent datasets of different scanning protocols (N = 394, 255, and 160, respectively). We examined the classification power of pure GMV features, as well as combined GMV and SNP features. Empirical experiments demonstrated that sparse DNN slightly outperformed independent component analysis + support vector machine (ICA + SVM) framework, and more effectively fused GMV and SNP features for SZ discrimination, with an average error rate of 28.98% on external data. The importance weights suggested that the DNN model prioritized to select frontal and superior temporal gyrus for SZ classification with high sparsity, with parietal regions further included with lower sparsity, echoing previous literature. The results validate the application of the proposed approach to SZ classification, and promise extended utility on other data modalities and traits which ultimately may result in clinically useful tools.