학술논문

Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2
Document Type
article
Source
Human Molecular Genetics. 31(6)
Subject
Digestive Diseases
Heart Disease
Atherosclerosis
Human Genome
Genetics
Cardiovascular
Heart Disease - Coronary Heart Disease
2.1 Biological and endogenous factors
Aetiology
Apolipoproteins B
Cholesterol
LDL
Coronary Artery Disease
Genome-Wide Association Study
Humans
Membrane Proteins
Proprotein Convertase 9
Receptors
LDL
Biological Sciences
Medical and Health Sciences
Genetics & Heredity
Language
Abstract
BackgroundProprotein convertase subtilisin/kexin type 9 (PCSK9) is a key player in lipid metabolism, as it degrades low-density lipoprotein (LDL) receptors from hepatic cell membranes. So far, only variants of the PCSK9 gene locus were found to be associated with PCSK9 levels. Here we aimed to identify novel genetic loci that regulate PCSK9 levels and how they relate to other lipid traits. Additionally, we investigated to what extend the causal effect of PCSK9 on coronary artery disease (CAD) is mediated by low-density lipoprotein-cholesterol (LDL-C).Methods and resultsWe performed a genome-wide association study meta-analysis of PCSK9 levels in up to 12 721 samples of European ancestry. The estimated heritability was 10.3%, which increased to 12.6% using only samples from patients without statin treatment. We successfully replicated the known PCSK9 hit consisting of three independent signals. Interestingly, in a study of 300 African Americans, we confirmed the locus with a different PCSK9 variant. Beyond PCSK9, our meta-analysis detected three novel loci with genome-wide significance. Co-localization analysis with cis-eQTLs and lipid traits revealed biologically plausible candidate genes at two of them: APOB and TM6SF2. In a bivariate Mendelian Randomization analysis, we detected a strong effect of PCSK9 on LDL-C, but not vice versa. LDL-C mediated 63% of the total causal effect of PCSK9 on CAD.ConclusionOur study identified novel genetic loci with plausible candidate genes affecting PCSK9 levels. Ethnic heterogeneity was observed at the PCSK9 locus itself. Although the causal effect of PCSK9 on CAD is mainly mediated by LDL-C, an independent direct effect also occurs.