학술논문

Genomic Patterns of De Novo Mutation in Simplex Autism
Document Type
article
Source
Cell. 171(3)
Subject
Biological Sciences
Bioinformatics and Computational Biology
Biomedical and Clinical Sciences
Genetics
Mental Health
Intellectual and Developmental Disabilities (IDD)
Autism
Human Genome
Brain Disorders
Biotechnology
Stem Cell Research
Pediatric
Animals
Autistic Disorder
DNA Copy Number Variations
DNA Mutational Analysis
Female
Genome-Wide Association Study
Humans
INDEL Mutation
Male
Mice
Polymorphism
Single Nucleotide
attributable fraction
autism
de novo mutation
genome sequencing
mechanisms of disease
multifactorial genetics
noncoding
oligogenic
regulatory
Medical and Health Sciences
Developmental Biology
Biological sciences
Biomedical and clinical sciences
Language
Abstract
To further our understanding of the genetic etiology of autism, we generated and analyzed genome sequence data from 516 idiopathic autism families (2,064 individuals). This resource includes >59 million single-nucleotide variants (SNVs) and 9,212 private copy number variants (CNVs), of which 133,992 and 88 are de novo mutations (DNMs), respectively. We estimate a mutation rate of ∼1.5 × 10-8 SNVs per site per generation with a significantly higher mutation rate in repetitive DNA. Comparing probands and unaffected siblings, we observe several DNM trends. Probands carry more gene-disruptive CNVs and SNVs, resulting in severe missense mutations and mapping to predicted fetal brain promoters and embryonic stem cell enhancers. These differences become more pronounced for autism genes (p = 1.8 × 10-3, OR = 2.2). Patients are more likely to carry multiple coding and noncoding DNMs in different genes, which are enriched for expression in striatal neurons (p = 3 × 10-3), suggesting a path forward for genetically characterizing more complex cases of autism.